RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 KRBA2Q6ZNG9 492 aa9.42□□□□□ -0.9
GPNMB-201ENST00000258733 MICALL1Q8N3F8 863 aa9.42□□□□□ -0.9
GPNMB-201ENST00000258733 CXorf38Q8TB03 319 aa9.42□□□□□ -0.9
GPNMB-201ENST00000258733 ZCRB1Q8TBF4 217 aaKnown RBP9.42□□□□□ -0.9
GPNMB-201ENST00000258733 STK24Q9Y6E0 443 aa9.42□□□□□ -0.9
GPNMB-201ENST00000258733 NAT1P18440 290 aa9.42□□□□□ -0.9
GPNMB-201ENST00000258733 XPCQ01831 940 aaPredicted RBP9.42□□□□□ -0.9
GPNMB-201ENST00000258733 TRDNQ13061 729 aa9.42□□□□□ -0.9
GPNMB-201ENST00000258733 ZKSCAN2Q63HK3 967 aa9.42□□□□□ -0.9
GPNMB-201ENST00000258733 CEP162Q5TB80 1403 aa9.42□□□□□ -0.9
GPNMB-201ENST00000258733 SKILP12757 684 aa9.42□□□□□ -0.9
GPNMB-201ENST00000258733 GSCP56915 257 aaPredicted RBP9.42□□□□□ -0.9
GPNMB-201ENST00000258733 INHBEP58166 350 aa9.42□□□□□ -0.9
GPNMB-201ENST00000258733 PDCL2Q8N4E4 241 aa9.42□□□□□ -0.9
GPNMB-201ENST00000258733 OGFRQ9NZT2 677 aa9.42□□□□□ -0.9
GPNMB-201ENST00000258733 KLHL23Q8NBE8 558 aa9.41□□□□□ -0.9
GPNMB-201ENST00000258733 RANBP17Q9H2T7 1088 aaKnown RBP9.41□□□□□ -0.9
GPNMB-201ENST00000258733 PANK3Q9H999 370 aa9.41□□□□□ -0.9
GPNMB-201ENST00000258733 IRAK4Q9NWZ3 460 aa9.41□□□□□ -0.9
GPNMB-201ENST00000258733 PHF8Q9UPP1 1060 aa9.41□□□□□ -0.9
GPNMB-201ENST00000258733 FRMD4BQ9Y2L6 1034 aa9.41□□□□□ -0.9
GPNMB-201ENST00000258733 ANKRD33BA6NCL7 494 aa9.41□□□□□ -0.9
GPNMB-201ENST00000258733 PES1O00541 588 aaKnown RBP9.41□□□□□ -0.9
GPNMB-201ENST00000258733 SRPK2P78362 688 aaKnown RBP9.41□□□□□ -0.9
GPNMB-201ENST00000258733 NEXNQ0ZGT2 675 aa9.41□□□□□ -0.9
GPNMB-201ENST00000258733 TERF2Q15554 542 aa9.41□□□□□ -0.9
GPNMB-201ENST00000258733 ZSCAN26Q16670 478 aa9.41□□□□□ -0.9
GPNMB-201ENST00000258733 DRC1Q96MC2 740 aa9.41□□□□□ -0.9
GPNMB-201ENST00000258733 PPP1R9BQ96SB3 815 aa9.41□□□□□ -0.9
GPNMB-201ENST00000258733 GOLGA3Q08378 1498 aa9.4□□□□□ -0.9
GPNMB-201ENST00000258733 ERCC6L2Q5T890 1561 aa9.4□□□□□ -0.9
GPNMB-201ENST00000258733 RBM27Q9P2N5 1060 aaKnown RBP9.4□□□□□ -0.9
GPNMB-201ENST00000258733 JRKLQ9Y4A0 524 aa9.4□□□□□ -0.9
GPNMB-201ENST00000258733 SMARCA5O60264 1052 aaPredicted RBP9.4□□□□□ -0.91
GPNMB-201ENST00000258733 CASQ1P31415 396 aa9.4□□□□□ -0.91
GPNMB-201ENST00000258733 ZNF232Q9UNY5 417 aa9.4□□□□□ -0.91
GPNMB-201ENST00000258733 SYNJ1O43426 1573 aa9.4□□□□□ -0.91
GPNMB-201ENST00000258733 ERICH4A6NGS2 130 aa9.39□□□□□ -0.91
GPNMB-201ENST00000258733 ECEL1O95672 775 aa9.39□□□□□ -0.91
GPNMB-201ENST00000258733 FAM163BP0C2L3 166 aa9.39□□□□□ -0.91
GPNMB-201ENST00000258733 U2AF2P26368 475 aaKnown RBP eCLIP9.39□□□□□ -0.91
GPNMB-201ENST00000258733 ATP6V1AP38606 617 aa9.39□□□□□ -0.91
GPNMB-201ENST00000258733 CCDC196A0A1B0GTZ2 297 aa9.39□□□□□ -0.91
GPNMB-201ENST00000258733 GYS2P54840 703 aa9.39□□□□□ -0.91
GPNMB-201ENST00000258733 HS1BP3Q53T59 392 aa9.39□□□□□ -0.91
GPNMB-201ENST00000258733 GTF2F1P35269 517 aaKnown RBP eCLIP9.38□□□□□ -0.91
GPNMB-201ENST00000258733 TBC1D22AQ8WUA7 517 aa9.38□□□□□ -0.91
GPNMB-201ENST00000258733 ARPC5LQ9BPX5 153 aa9.38□□□□□ -0.91
GPNMB-201ENST00000258733 MARCH6O60337 910 aa9.38□□□□□ -0.91
GPNMB-201ENST00000258733 SART3Q15020 963 aaKnown RBP9.38□□□□□ -0.91
GPNMB-201ENST00000258733 NOL7Q9UMY1 257 aaKnown RBP9.38□□□□□ -0.91
GPNMB-201ENST00000258733 PPME1Q9Y570 386 aa9.38□□□□□ -0.91
GPNMB-201ENST00000258733 RPGRIP1LQ68CZ1 1315 aa9.38□□□□□ -0.91
GPNMB-201ENST00000258733 DEF6Q9H4E7 631 aa9.38□□□□□ -0.91
GPNMB-201ENST00000258733 RMI1Q9H9A7 625 aa9.38□□□□□ -0.91
GPNMB-201ENST00000258733 RAD54L2Q9Y4B4 1467 aa9.37□□□□□ -0.91
GPNMB-201ENST00000258733 GOLGA6L6A8MZA4 724 aa9.37□□□□□ -0.91
GPNMB-201ENST00000258733 NEFHP12036 1026 aa9.37□□□□□ -0.91
GPNMB-201ENST00000258733 JAKMIP3Q5VZ66 844 aa9.37□□□□□ -0.91
GPNMB-201ENST00000258733 CEP126Q9P2H0 1117 aa9.37□□□□□ -0.91
GPNMB-201ENST00000258733 TOP2BQ02880 1626 aa9.37□□□□□ -0.91
GPNMB-201ENST00000258733 ERCC3P19447 782 aa9.37□□□□□ -0.91
GPNMB-201ENST00000258733 ATP2B1P20020 1258 aa9.37□□□□□ -0.91
GPNMB-201ENST00000258733 HELBQ8NG08 1087 aaPredicted RBP9.37□□□□□ -0.91
GPNMB-201ENST00000258733 TEX13AQ9BXU3 409 aaPredicted RBP9.37□□□□□ -0.91
GPNMB-201ENST00000258733 SMAPO00193 183 aa9.36□□□□□ -0.91
GPNMB-201ENST00000258733 KIF4AO95239 1232 aa9.36□□□□□ -0.91
GPNMB-201ENST00000258733 HMGN5P82970 282 aaKnown RBP9.36□□□□□ -0.91
GPNMB-201ENST00000258733 GORABQ5T7V8 394 aa9.36□□□□□ -0.91
GPNMB-201ENST00000258733 ZNF396Q96N95 335 aaPredicted RBP9.36□□□□□ -0.91
GPNMB-201ENST00000258733 CEP164Q9UPV0 1460 aa9.36□□□□□ -0.91
GPNMB-201ENST00000258733 SOGA1O94964 1423 aa9.36□□□□□ -0.91
GPNMB-201ENST00000258733 HNRNPH2P55795 449 aaKnown RBP9.36□□□□□ -0.91
GPNMB-201ENST00000258733 GOLGA6L1Q8N7Z2 621 aa9.36□□□□□ -0.91
GPNMB-201ENST00000258733 TSC1Q92574 1164 aa9.36□□□□□ -0.91
GPNMB-201ENST00000258733 ANKRD18BA2A2Z9 1011 aa9.35□□□□□ -0.91
GPNMB-201ENST00000258733 PUS10Q3MIT2 529 aaKnown RBP9.35□□□□□ -0.91
GPNMB-201ENST00000258733 TRIM74Q86UV6 250 aa9.35□□□□□ -0.91
GPNMB-201ENST00000258733 TRIM73Q86UV7 250 aa9.35□□□□□ -0.91
GPNMB-201ENST00000258733 PRIMPOLQ96LW4 560 aa9.35□□□□□ -0.91
GPNMB-201ENST00000258733 PPP1R15AO75807 674 aaPredicted RBP9.35□□□□□ -0.91
GPNMB-201ENST00000258733 JARID2Q92833 1246 aaPredicted RBP9.35□□□□□ -0.91
GPNMB-201ENST00000258733 CCP110O43303 1012 aa9.34□□□□□ -0.91
GPNMB-201ENST00000258733 TSGA10IPQ3SY00 556 aa9.34□□□□□ -0.91
GPNMB-201ENST00000258733 GOPCQ9HD26 462 aa9.34□□□□□ -0.91
GPNMB-201ENST00000258733 ERICH3Q5RHP9 1530 aa9.34□□□□□ -0.91
GPNMB-201ENST00000258733 HSPA5P11021 654 aaKnown RBP9.34□□□□□ -0.91
GPNMB-201ENST00000258733 FAM161AQ3B820 660 aa9.34□□□□□ -0.91
GPNMB-201ENST00000258733 CCDC184Q52MB2 194 aa9.34□□□□□ -0.91
GPNMB-201ENST00000258733 TTC19Q6DKK2 380 aaPredicted RBP9.34□□□□□ -0.91
GPNMB-201ENST00000258733 ETAA1Q9NY74 926 aa9.34□□□□□ -0.91
GPNMB-201ENST00000258733 TRAK2O60296 914 aa9.34□□□□□ -0.92
GPNMB-201ENST00000258733 CAPN15O75808 1086 aa9.34□□□□□ -0.92
GPNMB-201ENST00000258733 MAP2K2P36507 400 aa9.34□□□□□ -0.92
GPNMB-201ENST00000258733 CHAF1AQ13111 956 aaPredicted RBP9.34□□□□□ -0.92
GPNMB-201ENST00000258733 TMCO4Q5TGY1 634 aa9.34□□□□□ -0.92
GPNMB-201ENST00000258733 CHCHD3Q9NX63 227 aaKnown RBP9.34□□□□□ -0.92
GPNMB-201ENST00000258733 SUGT1Q9Y2Z0 365 aa9.34□□□□□ -0.92
GPNMB-201ENST00000258733 PPFIA4O75335 1185 aa9.33□□□□□ -0.92
GPNMB-201ENST00000258733 MCM5P33992 734 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms