RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 SAFBQ15424 915 aaKnown RBP eCLIP15.42■□□□□ 0.06
USP40-201ENST00000251722 SPRYD3Q8NCJ5 442 aa15.42■□□□□ 0.06
USP40-201ENST00000251722 ZNF428Q96B54 188 aa15.42■□□□□ 0.06
USP40-201ENST00000251722 XBP1P17861 261 aa15.42■□□□□ 0.06
USP40-201ENST00000251722 BRPF3Q9ULD4 1205 aa15.42■□□□□ 0.06
USP40-201ENST00000251722 BRMS1Q9HCU9 246 aa15.41■□□□□ 0.06
USP40-201ENST00000251722 PSMA5P28066 241 aa15.4■□□□□ 0.06
USP40-201ENST00000251722 RALYLQ86SE5 291 aaKnown RBP15.4■□□□□ 0.06
USP40-201ENST00000251722 CABP4P57796 275 aa15.4■□□□□ 0.06
USP40-201ENST00000251722 IRX3P78415 501 aaPredicted RBP15.4■□□□□ 0.06
USP40-201ENST00000251722 SART3Q15020 963 aaKnown RBP15.4■□□□□ 0.06
USP40-201ENST00000251722 ANO2Q9NQ90 1003 aa15.4■□□□□ 0.06
USP40-201ENST00000251722 FBXW7Q969H0 707 aa15.39■□□□□ 0.05
USP40-201ENST00000251722 MTHFSP49914 203 aa15.39■□□□□ 0.05
USP40-201ENST00000251722 TOM1L2Q6ZVM7 507 aa15.39■□□□□ 0.05
USP40-201ENST00000251722 HMOX1P09601 288 aa15.38■□□□□ 0.05
USP40-201ENST00000251722 CNTROBQ8N137 903 aa15.38■□□□□ 0.05
USP40-201ENST00000251722 COG6Q9Y2V7 657 aa15.38■□□□□ 0.05
USP40-201ENST00000251722 CCT4P50991 539 aaKnown RBP15.38■□□□□ 0.05
USP40-201ENST00000251722 NFXL1Q6ZNB6 911 aa15.38■□□□□ 0.05
USP40-201ENST00000251722 CLASRPQ8N2M8 674 aaKnown RBP15.38■□□□□ 0.05
USP40-201ENST00000251722 CCDC43Q96MW1 224 aaKnown RBP15.38■□□□□ 0.05
USP40-201ENST00000251722 RAPGEF3O95398 923 aa15.37■□□□□ 0.05
USP40-201ENST00000251722 DHX16O60231 1041 aaKnown RBP15.37■□□□□ 0.05
USP40-201ENST00000251722 PRDM11Q9NQV5 511 aa15.37■□□□□ 0.05
USP40-201ENST00000251722 CAMSAP2Q08AD1 1489 aa15.37■□□□□ 0.05
USP40-201ENST00000251722 WDR63Q8IWG1 891 aa15.36■□□□□ 0.05
USP40-201ENST00000251722 BRD2P25440 801 aaKnown RBP15.36■□□□□ 0.05
USP40-201ENST00000251722 PPP2R1AP30153 589 aa15.36■□□□□ 0.05
USP40-201ENST00000251722 SLKQ9H2G2 1235 aaPredicted RBP15.36■□□□□ 0.05
USP40-201ENST00000251722 GOLGA6L19H0YKK7 550 aa15.36■□□□□ 0.05
USP40-201ENST00000251722 BCL2L13Q9BXK5 485 aa15.36■□□□□ 0.05
USP40-201ENST00000251722 CRBNQ96SW2 442 aa15.35■□□□□ 0.05
USP40-201ENST00000251722 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.35■□□□□ 0.05
USP40-201ENST00000251722 ZSCAN25Q6NSZ9 544 aa15.35■□□□□ 0.05
USP40-201ENST00000251722 CCDC61Q9Y6R9 512 aa15.35■□□□□ 0.05
USP40-201ENST00000251722 RBM42Q9BTD8 480 aaKnown RBP15.34■□□□□ 0.05
USP40-201ENST00000251722 PRKAR2BP31323 418 aa15.34■□□□□ 0.05
USP40-201ENST00000251722 THOC2Q8NI27 1593 aaKnown RBP15.34■□□□□ 0.05
USP40-201ENST00000251722 MRE11P49959 708 aa15.34■□□□□ 0.05
USP40-201ENST00000251722 STRN4Q9NRL3 753 aa15.34■□□□□ 0.05
USP40-201ENST00000251722 FAM135AQ9P2D6 1515 aa15.34■□□□□ 0.05
USP40-201ENST00000251722 ZNF530Q6P9A1 599 aaPredicted RBP15.34■□□□□ 0.05
USP40-201ENST00000251722 CCDC158Q5M9N0 1113 aa15.34■□□□□ 0.05
USP40-201ENST00000251722 GCC1Q96CN9 775 aa15.33■□□□□ 0.05
USP40-201ENST00000251722 ARHGEF11O15085 1522 aa15.33■□□□□ 0.05
USP40-201ENST00000251722 CDC45O75419 566 aa15.33■□□□□ 0.04
USP40-201ENST00000251722 NEUROD6Q96NK8 337 aa15.33■□□□□ 0.04
USP40-201ENST00000251722 NUTM2GQ5VZR2 741 aa15.33■□□□□ 0.04
USP40-201ENST00000251722 CABP1Q9NZU7 370 aa15.33■□□□□ 0.04
USP40-201ENST00000251722 NUCB2P80303 420 aa15.32■□□□□ 0.04
USP40-201ENST00000251722 TCP11L2Q8N4U5 519 aa15.32■□□□□ 0.04
USP40-201ENST00000251722 BECN2A8MW95 431 aa15.32■□□□□ 0.04
USP40-201ENST00000251722 FCHSD2O94868 740 aa15.32■□□□□ 0.04
USP40-201ENST00000251722 AIMP1Q12904 312 aaKnown RBP15.32■□□□□ 0.04
USP40-201ENST00000251722 CCDC70Q6NSX1 233 aa15.32■□□□□ 0.04
USP40-201ENST00000251722 CDK13Q14004 1512 aaKnown RBP15.32■□□□□ 0.04
USP40-201ENST00000251722 MCM2P49736 904 aa15.32■□□□□ 0.04
USP40-201ENST00000251722 IPO7O95373 1038 aaKnown RBP15.32■□□□□ 0.04
USP40-201ENST00000251722 GNAI2P04899 355 aa15.32■□□□□ 0.04
USP40-201ENST00000251722 WASHC4Q2M389 1173 aa15.32■□□□□ 0.04
USP40-201ENST00000251722 AMOTQ4VCS5 1084 aa15.32■□□□□ 0.04
USP40-201ENST00000251722 NCBP3Q53F19 620 aaKnown RBP15.31■□□□□ 0.04
USP40-201ENST00000251722 NECTIN2Q92692 538 aa15.31■□□□□ 0.04
USP40-201ENST00000251722 PDE3AQ14432 1141 aa15.31■□□□□ 0.04
USP40-201ENST00000251722 NOL8Q76FK4 1167 aaKnown RBP15.31■□□□□ 0.04
USP40-201ENST00000251722 ZNF652Q9Y2D9 606 aa15.31■□□□□ 0.04
USP40-201ENST00000251722 TWISTNBQ3B726 338 aaPredicted RBP15.31■□□□□ 0.04
USP40-201ENST00000251722 HMGN5P82970 282 aaKnown RBP15.31■□□□□ 0.04
USP40-201ENST00000251722 MCTP1Q6DN14 999 aa15.31■□□□□ 0.04
USP40-201ENST00000251722 BIVM-ERCC5R4GMW8 1640 aa15.31■□□□□ 0.04
USP40-201ENST00000251722 RAD21O60216 631 aa15.3■□□□□ 0.04
USP40-201ENST00000251722 PAXIP1Q6ZW49 1069 aaPredicted RBP15.3■□□□□ 0.04
USP40-201ENST00000251722 KLHL34Q8N239 644 aa15.3■□□□□ 0.04
USP40-201ENST00000251722 CCDC27Q2M243 656 aa15.3■□□□□ 0.04
USP40-201ENST00000251722 FANCAO15360 1455 aa15.3■□□□□ 0.04
USP40-201ENST00000251722 NSD2O96028 1365 aa15.3■□□□□ 0.04
USP40-201ENST00000251722 STARD3NLO95772 234 aa15.3■□□□□ 0.04
USP40-201ENST00000251722 HDGFL1Q5TGJ6 251 aa15.3■□□□□ 0.04
USP40-201ENST00000251722 SMC3Q9UQE7 1217 aa15.29■□□□□ 0.04
USP40-201ENST00000251722 PTPN23Q9H3S7 1636 aa15.29■□□□□ 0.04
USP40-201ENST00000251722 URB2Q14146 1524 aaKnown RBP15.29■□□□□ 0.04
USP40-201ENST00000251722 NACAP1Q9BZK3 213 aa15.29■□□□□ 0.04
USP40-201ENST00000251722 NCOA1Q15788 1441 aa15.29■□□□□ 0.04
USP40-201ENST00000251722 NUDT16Q96DE0 195 aaKnown RBP15.29■□□□□ 0.04
USP40-201ENST00000251722 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.29■□□□□ 0.04
USP40-201ENST00000251722 PCF11O94913 1555 aaKnown RBP15.29■□□□□ 0.04
USP40-201ENST00000251722 SRCIN1Q9C0H9 1055 aa15.29■□□□□ 0.04
USP40-201ENST00000251722 DEF6Q9H4E7 631 aa15.29■□□□□ 0.04
USP40-201ENST00000251722 R3HCC1Q9Y3T6 440 aaKnown RBP15.28■□□□□ 0.04
USP40-201ENST00000251722 BCL11BQ9C0K0 894 aaPredicted RBP15.28■□□□□ 0.04
USP40-201ENST00000251722 CNNM1Q9NRU3 951 aa15.28■□□□□ 0.04
USP40-201ENST00000251722 AXDND1Q5T1B0 1012 aaPredicted RBP15.28■□□□□ 0.04
USP40-201ENST00000251722 EXOC6Q8TAG9 804 aa15.28■□□□□ 0.04
USP40-201ENST00000251722 PDE4AP27815 886 aa15.28■□□□□ 0.04
USP40-201ENST00000251722 FSD1Q9BTV5 496 aa15.28■□□□□ 0.04
USP40-201ENST00000251722 NFKBIBQ15653 356 aa15.27■□□□□ 0.04
USP40-201ENST00000251722 SULT6B1Q6IMI4 303 aa15.27■□□□□ 0.04
USP40-201ENST00000251722 ABCC11Q96J66 1382 aa15.27■□□□□ 0.04
USP40-201ENST00000251722 DHX29Q7Z478 1369 aaKnown RBP15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms