RNA–Protein interactions for RNA: ENSMUST00000139560.7

Ndc1-204, Transcript of Nucleoporin NDC1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ndc1, Length 4,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ndc1-204ENSMUST00000139560 Fkbp4P30416 458 aa14□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Anp32eP97822 260 aaKnown RBP14□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Mphosph10Q810V0 681 aaKnown RBP14□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Larp1bA0A0A6YXJ7 370 aaKnown RBP14□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Gm21969J3QJZ1 289 aa14□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Gigyf1Q99MR1 1044 aaKnown RBP14□□□□□ -0.17
Ndc1-204ENSMUST00000139560 HnrnpmQ9D0E1 729 aaKnown RBP14□□□□□ -0.17
Ndc1-204ENSMUST00000139560 CarsQ9ER72 831 aaKnown RBP14□□□□□ -0.17
Ndc1-204ENSMUST00000139560 EzrP26040 586 aaKnown RBP14□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Nol8Q3UHX0 1147 aaKnown RBP14□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Ppip5k2Q6ZQB6 1129 aa14□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Fam163aQ8CAA5 168 aa14□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Zhx1P70121 873 aa13.99□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Ddx11Q6AXC6 880 aa13.99□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Pof1bQ8K4L4 587 aa13.99□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Gtf2f1Q3THK3 508 aaKnown RBP13.99□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Sall3Q62255 1320 aa13.99□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Cdk19Q8BWD8 501 aa13.99□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Tmx1Q8VBT0 278 aa13.99□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Mctp1E9PV86 951 aa13.98□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Zkscan2G3X952 960 aa13.98□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Gpatch3Q8BIY1 525 aa13.98□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Rab11fip3Q8CHD8 1047 aa13.98□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Frmpd1A2AKB4 1549 aa13.98□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Polr1aO35134 1717 aaKnown RBP13.98□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Plb1Q3TTY0 1478 aa13.98□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Ftsj3Q9DBE9 838 aaKnown RBP13.98□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Rnf20Q5DTM8 973 aa13.98□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Gsdma3Q5Y4Y6 464 aa13.98□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Gm14025A2AP89 1413 aa13.98□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Catsper2A2ARP9 588 aa13.98□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Erc2Q6PH08 957 aa13.98□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Ints3Q7TPD0 1041 aaKnown RBP13.98□□□□□ -0.17
Ndc1-204ENSMUST00000139560 EprsQ8CGC7 1512 aaKnown RBP13.98□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Vps53Q8CCB4 832 aa13.97□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Ddx54Q8K4L0 874 aaKnown RBP13.97□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Q9D9S1 216 aa13.97□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Srgap3Q812A2 1099 aa13.97□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Hmgn5Q9JL35 406 aa13.97□□□□□ -0.17
Ndc1-204ENSMUST00000139560 AampJ3QN89 436 aa13.96□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Eva1cP58659 440 aa13.96□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Isy1Q69ZQ2 285 aaKnown RBP13.96□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Tshz3Q8CGV9 1081 aa13.96□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Cers3Q1A3B0 383 aa13.96□□□□□ -0.17
Ndc1-204ENSMUST00000139560 Eif5P59325 429 aaKnown RBP13.96□□□□□ -0.18
Ndc1-204ENSMUST00000139560 HypkQ9CR41 129 aa13.96□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Cdkn1cP49919 348 aa13.95□□□□□ -0.18
Ndc1-204ENSMUST00000139560 SrrtQ99MR6 875 aaKnown RBP13.95□□□□□ -0.18
Ndc1-204ENSMUST00000139560 TnmdQ9EP64 317 aa13.95□□□□□ -0.18
Ndc1-204ENSMUST00000139560 CrcpO35427 148 aa13.95□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Nphp1Q9QY53 687 aa13.95□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Rcan3Q9JKK0 239 aa13.95□□□□□ -0.18
Ndc1-204ENSMUST00000139560 PalmQ9Z0P4 383 aa13.95□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Rasa1E9PYG6 1038 aa13.95□□□□□ -0.18
Ndc1-204ENSMUST00000139560 NefhP19246 1090 aa13.95□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Cplx2P84086 134 aa13.95□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Ift57Q8BXG3 429 aa13.95□□□□□ -0.18
Ndc1-204ENSMUST00000139560 NaspQ99MD9 773 aaKnown RBP13.95□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Terf2O35144 541 aa13.94□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Cnnm1Q0GA42 951 aa13.94□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Znhit6Q3UFB2 460 aaKnown RBP13.94□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Mrc2Q64449 1479 aa13.94□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Tpm1P58771 284 aa13.94□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Cavin1O54724 392 aa13.93□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Abl1P00520 1123 aa13.93□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Zpr1Q62384 459 aa13.93□□□□□ -0.18
Ndc1-204ENSMUST00000139560 AqrQ8CFQ3 1481 aaKnown RBP13.93□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Hdgfl1Q2VPR5 283 aa13.93□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Mns1Q61884 491 aa13.93□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Fam43aQ8BUP8 424 aa13.93□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Secisbp2lQ6A098 1086 aaKnown RBP13.92□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Tmco3Q8BH01 678 aa13.92□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Il4rP16382 810 aa13.92□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Trim25Q61510 634 aaKnown RBP13.92□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Zranb1Q7M760 708 aa13.92□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Ccdc47Q9D024 483 aaKnown RBP13.92□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Cdc37l1Q9CZP7 335 aa13.91□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Gnai2P08752 355 aaKnown RBP13.91□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Ubxn4Q8VCH8 506 aa13.91□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Ccp110Q7TSH4 1004 aa13.91□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Bag4Q8CI61 457 aa13.91□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Ccdc171E9Q1U1 1324 aa13.91□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Exoc6bA6H5Z3 810 aa13.91□□□□□ -0.18
Ndc1-204ENSMUST00000139560 NcapgE9PWG6 1004 aa13.9□□□□□ -0.18
Ndc1-204ENSMUST00000139560 PdcQ9QW08 244 aa13.9□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Gprasp1Q5U4C1 1347 aa13.9□□□□□ -0.18
Ndc1-204ENSMUST00000139560 CalcaP70160 136 aa13.9□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Kif20aP97329 887 aa13.9□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Tbc1d9Q3UYK3 1264 aa13.9□□□□□ -0.18
Ndc1-204ENSMUST00000139560 AnlnQ8K298 1121 aaKnown RBP13.9□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Cfap99A0A140LIX9 648 aa13.9□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Map3k1P53349 1493 aa13.9□□□□□ -0.18
Ndc1-204ENSMUST00000139560 Gm21698A0A087WQP8 267 aa13.9□□□□□ -0.19
Ndc1-204ENSMUST00000139560 Gm21671G3UY31 267 aa13.9□□□□□ -0.19
Ndc1-204ENSMUST00000139560 Smg7Q5RJH6 1138 aaKnown RBP13.9□□□□□ -0.19
Ndc1-204ENSMUST00000139560 Trim30cD3YVI9 513 aa13.89□□□□□ -0.19
Ndc1-204ENSMUST00000139560 Me1P06801 572 aa13.89□□□□□ -0.19
Ndc1-204ENSMUST00000139560 Nap1l1P28656 391 aaKnown RBP13.89□□□□□ -0.19
Ndc1-204ENSMUST00000139560 Ccdc34Q3UI66 367 aa13.89□□□□□ -0.19
Ndc1-204ENSMUST00000139560 Dennd6aQ8BH65 605 aa13.89□□□□□ -0.19
Retrieved 100 of 22,080 RNA–protein pairs in 24.6 ms