RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 MYO5AQ9Y4I1 1855 aaKnown RBP4.91□□□□□ -1.62
LINC00540-201ENST00000611481 DNHD1Q96M86 4753 aa4.9□□□□□ -1.62
LINC00540-201ENST00000611481 CCDC195A0A1B0GUA6 201 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 RBMXL2O75526 392 aaKnown RBP4.9□□□□□ -1.63
LINC00540-201ENST00000611481 MATN4O95460 622 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 CFIP05156 583 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 MYBP10242 640 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 BDNFP23560 247 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 EDNRBP24530 442 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 ITPKBP27987 946 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 HOXC8P31273 242 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 HOXC13P31276 330 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 PPM1AP35813 382 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 CREB5Q02930 508 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 MGAT3Q09327 533 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 ZNF169Q14929 603 aaPredicted RBP4.9□□□□□ -1.63
LINC00540-201ENST00000611481 C10orf62Q5T681 223 aaPredicted RBP4.9□□□□□ -1.63
LINC00540-201ENST00000611481 CCNI2Q6ZMN8 369 aaPredicted RBP4.9□□□□□ -1.63
LINC00540-201ENST00000611481 PCGF5Q86SE9 256 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 DGKHQ86XP1 1220 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 AMOTL1Q8IY63 956 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 AHI1Q8N157 1196 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 RNF169Q8NCN4 708 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 ZFP28Q8NHY6 868 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 PPTC7Q8NI37 304 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 SDR42E1Q8WUS8 393 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 ORAI3Q9BRQ5 295 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 FTHL17Q9BXU8 183 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 CCDC8Q9H0W5 538 aaPredicted RBP4.9□□□□□ -1.63
LINC00540-201ENST00000611481 LMAN1LQ9HAT1 526 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 SPG21Q9NZD8 308 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 IL17BQ9UHF5 180 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 SALL3Q9BXA9 1300 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 COL5A1P20908 1838 aaPredicted RBP4.9□□□□□ -1.63
LINC00540-201ENST00000611481 LAMA4Q16363 1823 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 FNDC1Q4ZHG4 1894 aaPredicted RBP4.9□□□□□ -1.63
LINC00540-201ENST00000611481 ZMYM2Q9UBW7 1377 aa4.9□□□□□ -1.63
LINC00540-201ENST00000611481 LOXHD1Q8IVV2 1947 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 F5P12259 2224 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 CYP2D7A0A087X1C5 515 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 K7ESF4 209 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 CDX4O14627 284 aaPredicted RBP4.89□□□□□ -1.63
LINC00540-201ENST00000611481 APAF1O14727 1248 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 INPPL1O15357 1258 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 GAS7O60861 476 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 RFPL1O75677 317 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 RPP40O75818 363 aaKnown RBP4.89□□□□□ -1.63
LINC00540-201ENST00000611481 CAVIN2O95810 425 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 CCDC192P0DO97 292 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 MAN1A1P33908 653 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 ALDH7A1P49419 539 aaKnown RBP4.89□□□□□ -1.63
LINC00540-201ENST00000611481 RARRES1P49788 294 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 STAT2P52630 851 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 FAM193AP78312 1265 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 ITKQ08881 620 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 MTMR1Q13613 665 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 LY6DQ14210 128 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 WDR43Q15061 677 aaKnown RBP eCLIP4.89□□□□□ -1.63
LINC00540-201ENST00000611481 TMEM95Q3KNT9 176 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 SPDYE7PQ495Y7 208 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 C19orf54Q5BKX5 351 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 TTC39AQ5SRH9 613 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 METRNLQ641Q3 311 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 PDZD4Q76G19 769 aaPredicted RBP4.89□□□□□ -1.63
LINC00540-201ENST00000611481 LRRTM3Q86VH5 581 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 KIF18BQ86Y91 864 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 VPS52Q8N1B4 723 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 PAF1Q8N7H5 531 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 SCARB1Q8WTV0 552 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 Q96MF0 132 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 RIOK1Q9BRS2 568 aaKnown RBP4.89□□□□□ -1.63
LINC00540-201ENST00000611481 C16orf70Q9BSU1 422 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 TARS2Q9BW92 718 aaKnown RBP4.89□□□□□ -1.63
LINC00540-201ENST00000611481 CRNKL1Q9BZJ0 848 aaKnown RBP4.89□□□□□ -1.63
LINC00540-201ENST00000611481 USP44Q9H0E7 712 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 AASDHPPTQ9NRN7 309 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 HEBP1Q9NRV9 189 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 TCP11L1Q9NUJ3 509 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 NYAP2Q9P242 653 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 RNF7Q9UBF6 113 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 CLIP2Q9UDT6 1046 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 CDY2AQ9Y6F7 541 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 RPS6KL1Q9Y6S9 549 aa4.89□□□□□ -1.63
LINC00540-201ENST00000611481 NBPF19A0A087WUL8 3843 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 AHCTF1Q8WYP5 2266 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 PLXNB3Q9ULL4 1909 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 DNAJC9-AS1A6NH13 148 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 B4DLN1 442 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 NT5C1B-RDH14C9J2C7 533 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 TBX3O15119 743 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 PRAMEF4O60810 478 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 ITGA10O75578 1167 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 GASTP01350 101 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 KRT10P13645 584 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 SDSP20132 328 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 KLRC2P26717 231 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 METAP2P50579 478 aaKnown RBP eCLIP4.88□□□□□ -1.63
LINC00540-201ENST00000611481 CLCN4P51793 760 aa4.88□□□□□ -1.63
LINC00540-201ENST00000611481 MRPL12P52815 198 aaKnown RBP4.88□□□□□ -1.63
LINC00540-201ENST00000611481 RARSP54136 660 aaKnown RBP4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms