RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 MTO1Q9Y2Z2 717 aaKnown RBP17.34■□□□□ 0.37
USP28-208ENST00000540438 IQCA1LA6NCM1 817 aa17.34■□□□□ 0.37
USP28-208ENST00000540438 LRIG2O94898 1065 aa17.34■□□□□ 0.37
USP28-208ENST00000540438 ITGA2BP08514 1039 aa17.34■□□□□ 0.37
USP28-208ENST00000540438 NCF2P19878 526 aaPredicted RBP17.34■□□□□ 0.37
USP28-208ENST00000540438 PTPN3P26045 913 aa17.34■□□□□ 0.37
USP28-208ENST00000540438 NOS2P35228 1153 aa17.34■□□□□ 0.37
USP28-208ENST00000540438 PURAQ00577 322 aaKnown RBP17.34■□□□□ 0.37
USP28-208ENST00000540438 ZNF354CQ86Y25 554 aa17.34■□□□□ 0.37
USP28-208ENST00000540438 NT5DC4Q86YG4 428 aa17.34■□□□□ 0.37
USP28-208ENST00000540438 HNRNPABQ99729 332 aaKnown RBP17.34■□□□□ 0.37
USP28-208ENST00000540438 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.33■□□□□ 0.37
USP28-208ENST00000540438 FAM159BA6NKW6 160 aa17.33■□□□□ 0.37
USP28-208ENST00000540438 PMPCBO75439 489 aa17.33■□□□□ 0.37
USP28-208ENST00000540438 MSX2P35548 267 aaPredicted RBP17.33■□□□□ 0.37
USP28-208ENST00000540438 GPR15P49685 360 aa17.33■□□□□ 0.37
USP28-208ENST00000540438 ADAM17P78536 824 aa17.33■□□□□ 0.37
USP28-208ENST00000540438 SLC25A3Q00325 362 aa17.33■□□□□ 0.37
USP28-208ENST00000540438 RPS27LQ71UM5 84 aaKnown RBP17.33■□□□□ 0.37
USP28-208ENST00000540438 ALKBH8Q96BT7 664 aaKnown RBP17.33■□□□□ 0.37
USP28-208ENST00000540438 RTP4Q96DX8 246 aa17.33■□□□□ 0.37
USP28-208ENST00000540438 ZNF419Q96HQ0 510 aaPredicted RBP17.33■□□□□ 0.37
USP28-208ENST00000540438 OLFM3Q96PB7 478 aa17.33■□□□□ 0.37
USP28-208ENST00000540438 GORASP1Q9BQQ3 440 aa17.33■□□□□ 0.37
USP28-208ENST00000540438 WDR6Q9NNW5 1121 aaKnown RBP17.33■□□□□ 0.37
USP28-208ENST00000540438 NOP53Q9NZM5 478 aaKnown RBP17.33■□□□□ 0.37
USP28-208ENST00000540438 WASF2Q9Y6W5 498 aa17.33■□□□□ 0.37
USP28-208ENST00000540438 STAU1O95793 577 aaKnown RBP17.33■□□□□ 0.36
USP28-208ENST00000540438 HMBSP08397 361 aa17.33■□□□□ 0.36
USP28-208ENST00000540438 NMBRP28336 390 aa17.33■□□□□ 0.36
USP28-208ENST00000540438 CD68P34810 354 aaPredicted RBP17.33■□□□□ 0.36
USP28-208ENST00000540438 CHRNA4P43681 627 aa17.33■□□□□ 0.36
USP28-208ENST00000540438 CRYBB1P53674 252 aaPredicted RBP17.33■□□□□ 0.36
USP28-208ENST00000540438 SEMA5AQ13591 1074 aa17.33■□□□□ 0.36
USP28-208ENST00000540438 LGSNQ5TDP6 509 aa17.33■□□□□ 0.36
USP28-208ENST00000540438 RGS9BPQ6ZS82 235 aa17.33■□□□□ 0.36
USP28-208ENST00000540438 TFAP2DQ7Z6R9 452 aa17.33■□□□□ 0.36
USP28-208ENST00000540438 DCLK2Q8N568 766 aa17.33■□□□□ 0.36
USP28-208ENST00000540438 IPMKQ8NFU5 416 aa17.33■□□□□ 0.36
USP28-208ENST00000540438 NSL1Q96IY1 281 aa17.33■□□□□ 0.36
USP28-208ENST00000540438 MARK4Q96L34 752 aa17.33■□□□□ 0.36
USP28-208ENST00000540438 HSFY1Q96LI6 401 aa17.33■□□□□ 0.36
USP28-208ENST00000540438 TRMT13Q9NUP7 481 aaKnown RBP17.33■□□□□ 0.36
USP28-208ENST00000540438 GDAP2Q9NXN4 497 aa17.33■□□□□ 0.36
USP28-208ENST00000540438 SLC39A10Q9ULF5 831 aa17.33■□□□□ 0.36
USP28-208ENST00000540438 STAP1Q9ULZ2 295 aa17.33■□□□□ 0.36
USP28-208ENST00000540438 PRG3Q9Y2Y8 225 aaPredicted RBP17.33■□□□□ 0.36
USP28-208ENST00000540438 DICER1Q9UPY3 1922 aaKnown RBP17.33■□□□□ 0.36
USP28-208ENST00000540438 LTFP02788 710 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 ELNP15502 786 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 DAOAP59103 153 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 CTBP1Q13363 440 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 THOC5Q13769 683 aaKnown RBP17.32■□□□□ 0.36
USP28-208ENST00000540438 RCN1Q15293 331 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 TAF11Q15544 211 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 TAC4Q86UU9 113 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 PPP1R10Q96QC0 940 aaKnown RBP17.32■□□□□ 0.36
USP28-208ENST00000540438 APBA2Q99767 749 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 OMDQ99983 421 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 COLEC11Q9BWP8 271 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 C20orf96Q9NUD7 363 aaPredicted RBP17.32■□□□□ 0.36
USP28-208ENST00000540438 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.32■□□□□ 0.36
USP28-208ENST00000540438 SCAMP3O14828 347 aaKnown RBP17.32■□□□□ 0.36
USP28-208ENST00000540438 PTPN4P29074 926 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 EPHB1P54762 984 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 MAXP61244 160 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 CCDC6Q16204 474 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 ACSBG2Q5FVE4 666 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 WLSQ5T9L3 541 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 RAB3IPQ96QF0 476 aaPredicted RBP17.32■□□□□ 0.36
USP28-208ENST00000540438 FTHL17Q9BXU8 183 aa17.32■□□□□ 0.36
USP28-208ENST00000540438 GSC2O15499 205 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 BUD23O43709 281 aaKnown RBP17.31■□□□□ 0.36
USP28-208ENST00000540438 PDE5AO76074 875 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 USP1O94782 785 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 BPGMP07738 259 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 ELF1P32519 619 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 PBX3P40426 434 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 ACADSBP45954 432 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 RALGPS1Q5JS13 557 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 RAPH1Q70E73 1250 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 STRADAQ7RTN6 431 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 RNF135Q8IUD6 432 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 CRLF3Q8IUI8 442 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 RBM15BQ8NDT2 890 aaKnown RBP17.31■□□□□ 0.36
USP28-208ENST00000540438 OR10T2Q8NGX3 314 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 STK32AQ8WU08 396 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 MLPHQ9BV36 600 aaPredicted RBP17.31■□□□□ 0.36
USP28-208ENST00000540438 MOCS1Q9NZB8 636 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 MTF2Q9Y483 593 aaPredicted RBP17.31■□□□□ 0.36
USP28-208ENST00000540438 RANBP2P49792 3224 aaKnown RBP17.31■□□□□ 0.36
USP28-208ENST00000540438 E9PBE3 544 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 M0QZ92 97 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 B4GALT3O60512 393 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 KLHL41O60662 606 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 CPT1AP50416 773 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 SNX16P57768 344 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 SNX31Q8N9S9 440 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 SKA1Q96BD8 255 aa17.31■□□□□ 0.36
USP28-208ENST00000540438 BRD8Q9H0E9 1235 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms