RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 ACDQ96AP0 544 aa3.82□□□□□ -1.8
MCF2-210ENST00000536274 TMEM87BQ96K49 555 aa3.82□□□□□ -1.8
MCF2-210ENST00000536274 CSF3RQ99062 836 aa3.82□□□□□ -1.8
MCF2-210ENST00000536274 CLSTN3Q9BQT9 956 aa3.82□□□□□ -1.8
MCF2-210ENST00000536274 CCDC106Q9BWC9 280 aa3.82□□□□□ -1.8
MCF2-210ENST00000536274 BEX2Q9BXY8 128 aa3.82□□□□□ -1.8
MCF2-210ENST00000536274 GPAMQ9HCL2 828 aa3.82□□□□□ -1.8
MCF2-210ENST00000536274 PRDM8Q9NQV8 689 aa3.82□□□□□ -1.8
MCF2-210ENST00000536274 DDX28Q9NUL7 540 aaKnown RBP3.82□□□□□ -1.8
MCF2-210ENST00000536274 GDAP2Q9NXN4 497 aa3.82□□□□□ -1.8
MCF2-210ENST00000536274 GGA3Q9NZ52 723 aa3.82□□□□□ -1.8
MCF2-210ENST00000536274 GMPR2Q9P2T1 348 aaKnown RBP3.82□□□□□ -1.8
MCF2-210ENST00000536274 COL4A3BPQ9Y5P4 624 aa3.82□□□□□ -1.8
MCF2-210ENST00000536274 COL2A1P02458 1487 aaPredicted RBP3.82□□□□□ -1.8
MCF2-210ENST00000536274 SCN9AQ15858 1988 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 TNKSO95271 1327 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 TYW5A2RUC4 315 aaKnown RBP3.81□□□□□ -1.8
MCF2-210ENST00000536274 H0Y858 1186 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 PIK3CDO00329 1044 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 TSPAN4O14817 238 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 AIM2O14862 343 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 IDH3BO43837 385 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 RNASEH2AO75792 299 aaKnown RBP3.81□□□□□ -1.8
MCF2-210ENST00000536274 NCF2P19878 526 aaPredicted RBP3.81□□□□□ -1.8
MCF2-210ENST00000536274 ITGAXP20702 1163 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 MARSP56192 900 aaKnown RBP3.81□□□□□ -1.8
MCF2-210ENST00000536274 MAP3K7CLP57077 242 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 CCNA1P78396 465 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 TNK2Q07912 1038 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 EIF2B5Q13144 721 aaKnown RBP3.81□□□□□ -1.8
MCF2-210ENST00000536274 BFSP2Q13515 415 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 ECM1Q16610 540 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 MTX3Q5HYI7 312 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 ZFYVE27Q5T4F4 411 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 RSBN1Q5VWQ0 802 aaPredicted RBP3.81□□□□□ -1.8
MCF2-210ENST00000536274 SLC13A5Q86YT5 568 aaPredicted RBP3.81□□□□□ -1.8
MCF2-210ENST00000536274 RASAL3Q86YV0 1011 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 SLC22A15Q8IZD6 547 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 IFNL3Q8IZI9 196 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.81□□□□□ -1.8
MCF2-210ENST00000536274 DDI1Q8WTU0 396 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 ASIC4Q96FT7 647 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 SERAC1Q96JX3 654 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 KLHL32Q96NJ5 620 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 DEPDC7Q96QD5 511 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 ALOXE3Q9BYJ1 711 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 SLC13A1Q9BZW2 595 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 GHITMQ9H3K2 345 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 NANOGQ9H9S0 305 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 POLR1BQ9H9Y6 1135 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 SLC35C2Q9NQQ7 365 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 ANKMY1Q9P2S6 941 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 PCYOX1Q9UHG3 505 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 LGALS13Q9UHV8 139 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 CPSF3Q9UKF6 684 aaKnown RBP3.81□□□□□ -1.8
MCF2-210ENST00000536274 SATB2Q9UPW6 733 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 H3BNH8 94 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 TRIM77I1YAP6 450 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 PODXLO00592 558 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 XYLBO75191 536 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 UFL1O94874 794 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 ARHGEF15O94989 841 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 GSTM1P09488 218 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 MSL3P1P0C860 447 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 IL1R1P14778 569 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 ATF2P15336 505 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 CTRB1P17538 263 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 MAP4P27816 1152 aaKnown RBP3.81□□□□□ -1.8
MCF2-210ENST00000536274 TGFBR1P36897 503 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 ALDH7A1P49419 539 aaKnown RBP3.81□□□□□ -1.8
MCF2-210ENST00000536274 DRG2P55039 364 aaKnown RBP3.81□□□□□ -1.8
MCF2-210ENST00000536274 JAM2P57087 298 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 TFAP4Q01664 338 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 CDK18Q07002 472 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 NIPAL4Q0D2K0 466 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 BST1Q10588 318 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 FUT2Q10981 343 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 TRIM25Q14258 630 aaKnown RBP3.81□□□□□ -1.8
MCF2-210ENST00000536274 GRM7Q14831 915 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 PRKD1Q15139 912 aaPredicted RBP3.81□□□□□ -1.8
MCF2-210ENST00000536274 PTPRRQ15256 657 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 FAM47AQ5JRC9 791 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 MORN1Q5T089 497 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 SCARA3Q6AZY7 606 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 CTRB2Q6GPI1 263 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 ANKS1BQ7Z6G8 1248 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 AKAP14Q86UN6 197 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 KBTBD6Q86V97 674 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 ZNF280CQ8ND82 737 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 TOR1AIP2Q8NFQ8 470 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 CDC26Q8NHZ8 85 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 LRTOMTQ8WZ04 291 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 ZNF516Q92618 1163 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 MARC2Q969Z3 335 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 ATP6V1E2Q96A05 226 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 SNF8Q96H20 258 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 TTC25Q96NG3 672 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 BTBD9Q96Q07 612 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 DHRS9Q9BPW9 319 aa3.81□□□□□ -1.8
MCF2-210ENST00000536274 TMEM246Q9BRR3 403 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms