RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 HELLSQ9NRZ9 838 aa4□□□□□ -1.77
USP48-215ENST00000534705 GJB4Q9NTQ9 266 aa4□□□□□ -1.77
USP48-215ENST00000534705 DTNAQ9Y4J8 743 aa4□□□□□ -1.77
USP48-215ENST00000534705 SIRT4Q9Y6E7 314 aaPredicted RBP4□□□□□ -1.77
USP48-215ENST00000534705 ANKRD26Q9UPS8 1709 aa4□□□□□ -1.77
USP48-215ENST00000534705 GPRASP1Q5JY77 1395 aa4□□□□□ -1.77
USP48-215ENST00000534705 PNPLA6Q8IY17 1366 aa4□□□□□ -1.77
USP48-215ENST00000534705 JCADQ9P266 1359 aa4□□□□□ -1.77
USP48-215ENST00000534705 LMO7Q8WWI1 1683 aa4□□□□□ -1.77
USP48-215ENST00000534705 COL14A1Q05707 1796 aaKnown RBP3.99□□□□□ -1.77
USP48-215ENST00000534705 ANKARQ7Z5J8 1434 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 FYB1O15117 783 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 CA12O43570 354 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 DRD1P21728 446 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 SFPQP23246 707 aaKnown RBP eCLIP3.99□□□□□ -1.77
USP48-215ENST00000534705 RAE1P78406 368 aaKnown RBP3.99□□□□□ -1.77
USP48-215ENST00000534705 CFHR1Q03591 330 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 SRSF1Q07955 248 aaKnown RBP eCLIP3.99□□□□□ -1.77
USP48-215ENST00000534705 SLC14A1Q13336 389 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 TMEM196Q5HYL7 178 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 CC2D1BQ5T0F9 858 aaKnown RBP3.99□□□□□ -1.77
USP48-215ENST00000534705 FAM186BQ8IYM0 893 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 PARD3BQ8TEW8 1205 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 MAP4K1Q92918 833 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 CUL5Q93034 780 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 GRAMD1AQ96CP6 724 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 PKNOX2Q96KN3 472 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 ELAC2Q9BQ52 826 aaKnown RBP3.99□□□□□ -1.77
USP48-215ENST00000534705 PAAF1Q9BRP4 392 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 EBF3Q9H4W6 596 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 KCNK9Q9NPC2 374 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 NLRC4Q9NPP4 1024 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 ABHD10Q9NUJ1 306 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 TUBA8Q9NY65 449 aaPredicted RBP3.99□□□□□ -1.77
USP48-215ENST00000534705 MTMR4Q9NYA4 1195 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 STK26Q9P289 416 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 CEP83Q9Y592 693 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 EP400Q96L91 3159 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 DISP3Q9P2K9 1392 aa3.99□□□□□ -1.77
USP48-215ENST00000534705 GLI3P10071 1580 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 IGKV2D-30A0A075B6S6 120 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 CCDC187A0A096LP49 1063 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 FCHO1O14526 889 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 ZSCAN9O15535 394 aaPredicted RBP3.98□□□□□ -1.77
USP48-215ENST00000534705 CNOT3O75175 753 aaKnown RBP3.98□□□□□ -1.77
USP48-215ENST00000534705 USP12O75317 370 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 PEX14O75381 377 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 TOP3BO95985 862 aaKnown RBP3.98□□□□□ -1.77
USP48-215ENST00000534705 TACR3P29371 465 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 DEKP35659 375 aaKnown RBP3.98□□□□□ -1.77
USP48-215ENST00000534705 IGHMBP2P38935 993 aaKnown RBP3.98□□□□□ -1.77
USP48-215ENST00000534705 ARHGAP25P42331 645 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 HTR3AP46098 478 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 SEMA3BQ13214 749 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 SEC23BQ15437 767 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 TRIP6Q15654 476 aaKnown RBP3.98□□□□□ -1.77
USP48-215ENST00000534705 RAB30Q15771 203 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 CNGA3Q16281 694 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 TRIM71Q2Q1W2 868 aaKnown RBP3.98□□□□□ -1.77
USP48-215ENST00000534705 MAP9Q49MG5 647 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 ARHGAP15Q53QZ3 475 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 AWAT1Q58HT5 328 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 PXDC1Q5TGL8 231 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 CCDC144NLQ6NUI1 221 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 SRLQ86TD4 932 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 RASGRP3Q8IV61 690 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 SMC5Q8IY18 1101 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 C16orf71Q8IYS4 520 aaPredicted RBP3.98□□□□□ -1.77
USP48-215ENST00000534705 BCAS4Q8TDM0 211 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 GLMPQ8WWB7 406 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 PMM1Q92871 262 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 KIAA1191Q96A73 305 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 COQ8BQ96D53 544 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 TMEM41AQ96HV5 264 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 PRAM1Q96QH2 718 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 SH2D3AQ9BRG2 576 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 KLHL13Q9P2N7 655 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 PI4KBQ9UBF8 816 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 UBE2J1Q9Y385 318 aaPredicted RBP3.98□□□□□ -1.77
USP48-215ENST00000534705 KAT6BQ8WYB5 2073 aa3.98□□□□□ -1.77
USP48-215ENST00000534705 SPATA31A5Q5VU36 1347 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 SPATA31A7Q8IWB4 1347 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 TTC34A8MYJ7 566 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 KCNU1A8MYU2 1149 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 PCDH17O14917 1159 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 CTIFO43310 598 aaKnown RBP3.97□□□□□ -1.77
USP48-215ENST00000534705 NTSR2O95665 410 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 IFIT2P09913 472 aaKnown RBP3.97□□□□□ -1.77
USP48-215ENST00000534705 GSTM5P46439 218 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 RPS13P62277 151 aaKnown RBP3.97□□□□□ -1.77
USP48-215ENST00000534705 GHRHRQ02643 423 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 HDAC1Q13547 482 aaPredicted RBP3.97□□□□□ -1.77
USP48-215ENST00000534705 CSHL1Q14406 222 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 PFKFB3Q16875 520 aaPredicted RBP3.97□□□□□ -1.77
USP48-215ENST00000534705 GLE1Q53GS7 698 aaKnown RBP3.97□□□□□ -1.77
USP48-215ENST00000534705 KIAA1161Q6NSJ0 714 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 ACSM6Q6P461 480 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 DLK2Q6UY11 383 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 PIK3AP1Q6ZUJ8 805 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 TTC30AQ86WT1 665 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms