RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 TMEM196Q5HYL7 178 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 GKAP1Q5VSY0 366 aaPredicted RBP6.4□□□□□ -1.38
BRCA1-224ENST00000497488 RPTNQ6XPR3 784 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 OTOAQ7RTW8 1153 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 ARHGAP12Q8IWW6 846 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 TUSC5Q8IXB3 177 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 TMEFF1Q8IYR6 380 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 SPATA20Q8TB22 786 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 NOC3LQ8WTT2 800 aaKnown RBP6.4□□□□□ -1.38
BRCA1-224ENST00000497488 ZFAND2BQ8WV99 257 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 ZNF606Q8WXB4 792 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 MRPS27Q92552 414 aaKnown RBP6.4□□□□□ -1.38
BRCA1-224ENST00000497488 FAM149B1Q96BN6 582 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 SHISA4Q96DD7 197 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 SAT2Q96F10 170 aaPredicted RBP6.4□□□□□ -1.38
BRCA1-224ENST00000497488 PHACTR3Q96KR7 559 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 CLSTN3Q9BQT9 956 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.4□□□□□ -1.38
BRCA1-224ENST00000497488 C1orf21Q9H246 121 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 POLR1BQ9H9Y6 1135 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 LIN28AQ9H9Z2 209 aaKnown RBP6.4□□□□□ -1.38
BRCA1-224ENST00000497488 SIRT3Q9NTG7 399 aaPredicted RBP6.4□□□□□ -1.38
BRCA1-224ENST00000497488 FAM30AQ9NZY2 134 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 TUBE1Q9UJT0 475 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 ANAPC2Q9UJX6 822 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 LIPT1Q9Y234 373 aa6.4□□□□□ -1.38
BRCA1-224ENST00000497488 PNPLA7Q6ZV29 1317 aa6.4□□□□□ -1.39
BRCA1-224ENST00000497488 UACAQ9BZF9 1416 aa6.4□□□□□ -1.39
BRCA1-224ENST00000497488 UHRF1BP1LA0JNW5 1464 aa6.4□□□□□ -1.39
BRCA1-224ENST00000497488 SAMD9Q5K651 1589 aa6.4□□□□□ -1.39
BRCA1-224ENST00000497488 KIF13AQ9H1H9 1805 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 A0A1W2PQF6 199 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 TRBC2A0A5B9 178 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 OR2A25A4D2G3 310 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 NUDT19A8MXV4 375 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 ADM5C9JUS6 153 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 DNM1LO00429 736 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 PJA2O43164 708 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 PROM1O43490 865 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 TFEBP19484 476 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 YY1P25490 414 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 CPOXP36551 454 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 MTHFRP42898 656 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 GSTM5P46439 218 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 NPY4RP50391 375 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 STAT2P52630 851 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 ZNF134P52741 427 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 STARD6P59095 220 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 ERVFRD-1P60508 538 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 GOLGA8FQ08AF8 430 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 BNIP3Q12983 259 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 RPA4Q13156 261 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 CPSF6Q16630 551 aaKnown RBP eCLIP6.39□□□□□ -1.39
BRCA1-224ENST00000497488 AAK1Q2M2I8 961 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 TIGD5Q53EQ6 642 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 GLRA4Q5JXX5 417 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 PARS2Q7L3T8 475 aaKnown RBP6.39□□□□□ -1.39
BRCA1-224ENST00000497488 KBTBD6Q86V97 674 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 TICAM1Q8IUC6 712 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 TBC1D21Q8IYX1 336 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 OTUD6BQ8N6M0 293 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 SMARCC2Q8TAQ2 1214 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 ALG3Q92685 438 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 GCDHQ92947 438 aaPredicted RBP6.39□□□□□ -1.39
BRCA1-224ENST00000497488 SMARCE1Q969G3 411 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 BICD1Q96G01 975 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 PDLIM5Q96HC4 596 aaKnown RBP6.39□□□□□ -1.39
BRCA1-224ENST00000497488 KLHL15Q96M94 604 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 DGAT2Q96PD7 388 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 MAP7D2Q96T17 732 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 SPXQ9BT56 116 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 MRPL1Q9BYD6 325 aaKnown RBP6.39□□□□□ -1.39
BRCA1-224ENST00000497488 FAM129AQ9BZQ8 928 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 CLPBQ9H078 707 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 VPS33BQ9H267 617 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 CXorf36Q9H7Y0 433 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 NRDE2Q9H7Z3 1164 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 GBA2Q9HCG7 927 aaPredicted RBP6.39□□□□□ -1.39
BRCA1-224ENST00000497488 MCM9Q9NXL9 1143 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 SEC63Q9UGP8 760 aaKnown RBP6.39□□□□□ -1.39
BRCA1-224ENST00000497488 GPR160Q9UJ42 338 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 TRPC5Q9UL62 973 aaPredicted RBP6.39□□□□□ -1.39
BRCA1-224ENST00000497488 PADI1Q9ULC6 663 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 PPIEQ9UNP9 301 aaKnown RBP6.39□□□□□ -1.39
BRCA1-224ENST00000497488 MRPS17Q9Y2R5 130 aaKnown RBP6.39□□□□□ -1.39
BRCA1-224ENST00000497488 RBM8AQ9Y5S9 174 aaKnown RBP6.39□□□□□ -1.39
BRCA1-224ENST00000497488 SESN1Q9Y6P5 492 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 GOLGA3Q08378 1498 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 DIP2BQ9P265 1576 aa6.39□□□□□ -1.39
BRCA1-224ENST00000497488 SYNJ2BP-COX16A0A087WUM0 186 aa6.38□□□□□ -1.39
BRCA1-224ENST00000497488 RECQL5O94762 991 aaPredicted RBP6.38□□□□□ -1.39
BRCA1-224ENST00000497488 POMCP01189 267 aa6.38□□□□□ -1.39
BRCA1-224ENST00000497488 C8BP07358 591 aa6.38□□□□□ -1.39
BRCA1-224ENST00000497488 PRR35P0CG20 571 aa6.38□□□□□ -1.39
BRCA1-224ENST00000497488 PCP4P48539 62 aa6.38□□□□□ -1.39
BRCA1-224ENST00000497488 PXNP49023 591 aaPredicted RBP6.38□□□□□ -1.39
BRCA1-224ENST00000497488 MAPKAPK2P49137 400 aa6.38□□□□□ -1.39
BRCA1-224ENST00000497488 GPC3P51654 580 aa6.38□□□□□ -1.39
BRCA1-224ENST00000497488 EPHB3P54753 998 aa6.38□□□□□ -1.39
BRCA1-224ENST00000497488 MFAP4P55083 255 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms