RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 APCDD1Q8J025 514 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CFAP52Q8N1V2 620 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 PNPLA1Q8N8W4 532 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SHC3Q92529 594 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 PTPRN2Q92932 1015 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 FAM131CQ96AQ9 280 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 BTN2A3PQ96KV6 586 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SLC2A13Q96QE2 648 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 EBF2Q9HAK2 575 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ST7Q9NRC1 585 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TJP2Q9UDY2 1190 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SERGEFQ9UGK8 458 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SLCO3A1Q9UIG8 710 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 RWDD2AQ9UIY3 292 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ERVW-1Q9UQF0 538 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ANKRD6Q9Y2G4 727 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 PCDHB9Q9Y5E1 797 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SNX11Q9Y5W9 270 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 URB1O60287 2271 aaKnown RBP12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 GTPBP10A4D1E9 387 aaKnown RBP12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TTC34A8MYJ7 566 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 MED7O43513 233 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 PCDHGA12O60330 932 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 LETM1O95202 739 aaPredicted RBP12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 GLI1P08151 1106 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SLC9A1P19634 815 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TACR2P21452 398 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CTSKP43235 329 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 APBA1Q02410 837 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 PDCLQ13371 301 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 KCNJ12Q14500 433 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TTC31Q49AM3 519 aaPredicted RBP12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 GJB7Q6PEY0 223 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CARNMT1Q8N4J0 409 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 IGSF8Q969P0 613 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 FAM149B1Q96BN6 582 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ALG14Q96F25 216 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 FAM81BQ96LP2 452 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TRIM62Q9BVG3 475 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 NEUROG2Q9H2A3 272 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ASNSD1Q9NWL6 643 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 FBXL12Q9NXK8 326 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 KIAA1468Q9P260 1216 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 RALYQ9UKM9 306 aaKnown RBP12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 PCDHGC3Q9UN70 934 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 BTBD3Q9Y2F9 522 aa12.67□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ATRXP46100 2492 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 A0A1W2PPC4 97 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 MID1O15344 667 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 FLRT2O43155 660 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 FGFR1OPO95684 399 aaKnown RBP12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 KRT5P13647 590 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 PON1P27169 355 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 GNA15P30679 374 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 RACK1P63244 317 aaKnown RBP12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ECT2LQ008S8 904 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SLC12A1Q13621 1099 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CDH18Q13634 790 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CST6Q15828 149 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 C5orf22Q49AR2 442 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ARTNQ5T4W7 220 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 KIAA0895LQ68EN5 471 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 PROSER1Q86XN7 944 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 DHX40Q8IX18 779 aaKnown RBP12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 LGI2Q8N0V4 545 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 AADATQ8N5Z0 425 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 FRS2Q8WU20 508 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ZCCHC14Q8WYQ9 949 aaKnown RBP12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CPXM1Q96SM3 734 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CDC6Q99741 560 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CRACR2AQ9BSW2 395 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SIX2Q9NPC8 291 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 APEX2Q9UBZ4 518 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 FZD4Q9ULV1 537 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 APOBEC2Q9Y235 224 aaKnown RBP12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 DOCK4Q8N1I0 1966 aa12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 COL5A1P20908 1838 aaPredicted RBP12.66□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ADAMTS20P59510 1910 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 EDDM13A0A1B0GTR0 161 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TYW5A2RUC4 315 aaKnown RBP12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CAPN9O14815 690 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 VILLO15195 856 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 THAP12O43422 761 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 FSBPO95073 299 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 MOCS2O96007 188 aaPredicted RBP12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 WNT1P04628 370 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ATXN1LP0C7T5 689 aaKnown RBP12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SLC8A1P32418 973 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CLCN1P35523 988 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CCR5P51681 352 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ST8SIA6P61647 398 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TEAD4Q15561 434 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 RAP1GAP2Q684P5 730 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CXorf57Q6NSI4 855 aaKnown RBP12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 FBXL22Q6P050 247 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 NCEH1Q6PIU2 408 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TMPRSS7Q7RTY8 843 aa12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 MMAAQ8IVH4 418 aaKnown RBP12.65□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 DEFB106AQ8N104 65 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms