RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 RXFP1Q9HBX9 757 aa17.51■□□□□ 0.39
PTPRF-209ENST00000438120 COMMD8Q9NX08 183 aa17.51■□□□□ 0.39
PTPRF-209ENST00000438120 CCDC154A6NI56 674 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 TRDMT1O14717 391 aaKnown RBP17.5■□□□□ 0.39
PTPRF-209ENST00000438120 AXLP30530 894 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 NR2C2P49116 596 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 LPPQ93052 612 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 SEMA4BQ9NPR2 832 aaPredicted RBP17.5■□□□□ 0.39
PTPRF-209ENST00000438120 RRN3Q9NYV6 651 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 TRHDEQ9UKU6 1024 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 NDUFAF1Q9Y375 327 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 FCHO1O14526 889 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 IRX1P78414 480 aaPredicted RBP17.5■□□□□ 0.39
PTPRF-209ENST00000438120 ZC3H12AQ5D1E8 599 aaKnown RBP17.5■□□□□ 0.39
PTPRF-209ENST00000438120 NMRAL1Q9HBL8 299 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 RHBDL2Q9NX52 303 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 COPG1Q9Y678 874 aaKnown RBP17.5■□□□□ 0.39
PTPRF-209ENST00000438120 KANSL1LA0AUZ9 987 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 ZNF844Q08AG5 666 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 RAP1GAP2Q684P5 730 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 PTPN1P18031 435 aaKnown RBP17.5■□□□□ 0.39
PTPRF-209ENST00000438120 TRIM16LQ309B1 348 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 PRCCQ92733 491 aaPredicted RBP17.5■□□□□ 0.39
PTPRF-209ENST00000438120 VPS33AQ96AX1 596 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 NMD3Q96D46 503 aaKnown RBP17.5■□□□□ 0.39
PTPRF-209ENST00000438120 OXNAD1Q96HP4 312 aaPredicted RBP17.5■□□□□ 0.39
PTPRF-209ENST00000438120 PORCNQ9H237 461 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 MARCH2Q9P0N8 246 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 SALL3Q9BXA9 1300 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 ADRB2P07550 413 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 PSMB4P28070 264 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 CRABP2P29373 138 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 TNFSF9P41273 254 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 ISLR2Q6UXK2 745 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 SOCS4Q8WXH5 440 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 PIK3R5Q8WYR1 880 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 ZBTB10Q96DT7 871 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 VCPIP1Q96JH7 1222 aa17.5■□□□□ 0.39
PTPRF-209ENST00000438120 KDELR1P24390 212 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 SOX6P35712 828 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 DEPDC7Q96QD5 511 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 PDP2Q9P2J9 529 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 OR12D3Q9UGF7 316 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 ABCA9Q8IUA7 1624 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 GLRA2P23416 452 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 NOS3P29474 1203 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 OR52K1Q8NGK4 314 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 MCOLN3Q8TDD5 553 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 SPACA7Q96KW9 195 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 CROTQ9UKG9 612 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 A0A0U1RQJ8 604 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 PPP2R1BP30154 601 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 ARMC12Q5T9G4 340 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 TBCDQ9BTW9 1192 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 PRKD2Q9BZL6 878 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 RHBGQ9H310 441 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 LIMD1Q9UGP4 676 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 DPP7Q9UHL4 492 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 GJB1P08034 283 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 EIF4BP23588 611 aaKnown RBP17.49■□□□□ 0.39
PTPRF-209ENST00000438120 PSMB9P28065 219 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 NCF4Q15080 339 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 CELF3Q5SZQ8 465 aaKnown RBP17.49■□□□□ 0.39
PTPRF-209ENST00000438120 TMEM26Q6ZUK4 368 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 C1orf186Q6ZWK4 172 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 TRAPPC5Q8IUR0 188 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 FAM126BQ8IXS8 530 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 OR56A4Q8NGH8 313 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 HGH1Q9BTY7 390 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 DCLRE1BQ9H816 532 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 IRF6O14896 467 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 DCXO43602 365 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 KPNB1Q14974 876 aaKnown RBP17.49■□□□□ 0.39
PTPRF-209ENST00000438120 ATP13A4Q4VNC1 1196 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 SETMARQ53H47 684 aaPredicted RBP17.49■□□□□ 0.39
PTPRF-209ENST00000438120 IL27RAQ6UWB1 636 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 FAM183BPQ6ZVS7 135 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 MARK4Q96L34 752 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 MTMR9Q96QG7 549 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 AP4S1Q9Y587 144 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 N6AMT1Q9Y5N5 214 aa17.49■□□□□ 0.39
PTPRF-209ENST00000438120 NWD1Q149M9 1564 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 NUDT14O95848 222 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 ADRA1DP25100 572 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 AMPD2Q01433 879 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 NSMCE2Q96MF7 247 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 BPIFA1Q9NP55 256 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 THAP1Q9NVV9 213 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 TPP1O14773 563 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 FAM20BO75063 409 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 FYNP06241 537 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 DPP10Q8N608 796 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 RNF145Q96MT1 663 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 MRPL9Q9BYD2 267 aaKnown RBP17.48■□□□□ 0.39
PTPRF-209ENST00000438120 ETNK2Q9NVF9 386 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 AHSPQ9NZD4 102 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 CES2O00748 559 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 POLR2EP19388 210 aaKnown RBP17.48■□□□□ 0.39
PTPRF-209ENST00000438120 NT5DC1Q5TFE4 455 aa17.48■□□□□ 0.39
PTPRF-209ENST00000438120 SDHAF4Q5VUM1 108 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms