RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 EXOC1LA0A1B0GW35 172 aa21.67■■□□□ 1.06
PTPRF-207ENST00000436724 SPATA31D3P0C874 917 aa21.67■■□□□ 1.06
PTPRF-207ENST00000436724 MX2P20592 715 aa21.67■■□□□ 1.06
PTPRF-207ENST00000436724 CA8P35219 290 aa21.67■■□□□ 1.06
PTPRF-207ENST00000436724 KCNQ1P51787 676 aa21.67■■□□□ 1.06
PTPRF-207ENST00000436724 STAT4Q14765 748 aa21.67■■□□□ 1.06
PTPRF-207ENST00000436724 TPGS2Q68CL5 300 aa21.67■■□□□ 1.06
PTPRF-207ENST00000436724 SPATA31D4Q6ZUB0 917 aa21.67■■□□□ 1.06
PTPRF-207ENST00000436724 CYP4X1Q8N118 509 aa21.67■■□□□ 1.06
PTPRF-207ENST00000436724 PDCD7Q8N8D1 485 aaKnown RBP21.67■■□□□ 1.06
PTPRF-207ENST00000436724 MRRFQ96E11 262 aaKnown RBP21.67■■□□□ 1.06
PTPRF-207ENST00000436724 C1orf74Q96LT6 269 aa21.67■■□□□ 1.06
PTPRF-207ENST00000436724 FERMT1Q9BQL6 677 aa21.67■■□□□ 1.06
PTPRF-207ENST00000436724 FAM107BQ9H098 131 aa21.67■■□□□ 1.06
PTPRF-207ENST00000436724 CATSPERBQ9H7T0 1116 aa21.67■■□□□ 1.06
PTPRF-207ENST00000436724 KLHL8Q9P2G9 620 aaPredicted RBP21.67■■□□□ 1.06
PTPRF-207ENST00000436724 CDH23Q9H251 3354 aa21.67■■□□□ 1.06
PTPRF-207ENST00000436724 ALPK3Q96L96 1907 aa21.66■■□□□ 1.06
PTPRF-207ENST00000436724 FGF18O76093 207 aa21.66■■□□□ 1.06
PTPRF-207ENST00000436724 CSPG5O95196 566 aa21.66■■□□□ 1.06
PTPRF-207ENST00000436724 GCAP28676 217 aa21.66■■□□□ 1.06
PTPRF-207ENST00000436724 RAB33AQ14088 237 aa21.66■■□□□ 1.06
PTPRF-207ENST00000436724 TNFAIP8L3Q5GJ75 292 aa21.66■■□□□ 1.06
PTPRF-207ENST00000436724 PPP1R21Q6ZMI0 780 aa21.66■■□□□ 1.06
PTPRF-207ENST00000436724 PALM2Q8IXS6 379 aa21.66■■□□□ 1.06
PTPRF-207ENST00000436724 AGAP3Q96P47 875 aa21.66■■□□□ 1.06
PTPRF-207ENST00000436724 CCT8L2Q96SF2 557 aa21.66■■□□□ 1.06
PTPRF-207ENST00000436724 ZBED2Q9BTP6 218 aa21.66■■□□□ 1.06
PTPRF-207ENST00000436724 MRPL17Q9NRX2 175 aaKnown RBP21.66■■□□□ 1.06
PTPRF-207ENST00000436724 PIH1D1Q9NWS0 290 aaKnown RBP21.66■■□□□ 1.06
PTPRF-207ENST00000436724 PRKAG2Q9UGJ0 569 aa21.66■■□□□ 1.06
PTPRF-207ENST00000436724 RANBP2P49792 3224 aaKnown RBP21.66■■□□□ 1.06
PTPRF-207ENST00000436724 SRRM3A6NNA2 597 aaPredicted RBP21.65■■□□□ 1.06
PTPRF-207ENST00000436724 POC1B-GALNT4F8VUJ3 575 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 PRRG1O14668 218 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 TEX28O15482 410 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 FGF10O15520 208 aaPredicted RBP21.65■■□□□ 1.06
PTPRF-207ENST00000436724 TCEA3O75764 348 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 IGLV3-27P01718 113 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 ALDH1A3P47895 512 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 EFTUD2Q15029 972 aaKnown RBP eCLIP21.65■■□□□ 1.065e-6■■■□□ 16.7
PTPRF-207ENST00000436724 RAP1GAP2Q684P5 730 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 TFAP2DQ7Z6R9 452 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 CROCCP2Q86T23 111 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 NLRP14Q86W24 1093 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 ZNF683Q8IZ20 524 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 ATP11CQ8NB49 1132 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 ZNF473Q8WTR7 871 aaKnown RBP21.65■■□□□ 1.06
PTPRF-207ENST00000436724 BTN2A3PQ96KV6 586 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 CCDC77Q9BR77 488 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 SLC39A8Q9C0K1 460 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 PCDHB12Q9Y5F1 795 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 ZNF840PA6NDX5 716 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 ZBTB24O43167 697 aaPredicted RBP21.65■■□□□ 1.06
PTPRF-207ENST00000436724 CNTN5O94779 1100 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 AGTP01019 485 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 TPSB2P20231 275 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 PPP2R2AP63151 447 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 FPGSQ05932 587 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 PLD1Q13393 1074 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 TPSAB1Q15661 275 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 ATP6V0D2Q8N8Y2 350 aa21.65■■□□□ 1.06
PTPRF-207ENST00000436724 TRIM56Q9BRZ2 755 aaKnown RBP21.65■■□□□ 1.06
PTPRF-207ENST00000436724 GOLGA6L7A0A1B0GV03 622 aa21.64■■□□□ 1.06
PTPRF-207ENST00000436724 FDFT1P37268 417 aa21.64■■□□□ 1.06
PTPRF-207ENST00000436724 HTRA4P83105 476 aaPredicted RBP21.64■■□□□ 1.06
PTPRF-207ENST00000436724 NRG1Q02297 640 aaPredicted RBP21.64■■□□□ 1.06
PTPRF-207ENST00000436724 TWF1Q12792 350 aa21.64■■□□□ 1.06
PTPRF-207ENST00000436724 OLIG2Q13516 323 aa21.64■■□□□ 1.06
PTPRF-207ENST00000436724 ALFQ53S48 1182 aa21.64■■□□□ 1.06
PTPRF-207ENST00000436724 MPP5Q8N3R9 675 aa21.64■■□□□ 1.06
PTPRF-207ENST00000436724 FIBCD1Q8N539 461 aa21.64■■□□□ 1.06
PTPRF-207ENST00000436724 RTL3Q8N8U3 475 aaKnown RBP21.64■■□□□ 1.06
PTPRF-207ENST00000436724 MCUQ8NE86 351 aa21.64■■□□□ 1.06
PTPRF-207ENST00000436724 ZSCAN18Q8TBC5 510 aaPredicted RBP21.64■■□□□ 1.06
PTPRF-207ENST00000436724 DPF3Q92784 378 aa21.64■■□□□ 1.06
PTPRF-207ENST00000436724 IGSF8Q969P0 613 aa21.64■■□□□ 1.06
PTPRF-207ENST00000436724 MYEOVQ96EZ4 313 aa21.64■■□□□ 1.06
PTPRF-207ENST00000436724 GORASP1Q9BQQ3 440 aa21.64■■□□□ 1.06
PTPRF-207ENST00000436724 MCOLN1Q9GZU1 580 aa21.64■■□□□ 1.06
PTPRF-207ENST00000436724 RABGEF1Q9UJ41 708 aa21.64■■□□□ 1.06
PTPRF-207ENST00000436724 CSH1P0DML2 217 aa21.64■■□□□ 1.05
PTPRF-207ENST00000436724 CSH2P0DML3 217 aa21.64■■□□□ 1.05
PTPRF-207ENST00000436724 CD68P34810 354 aaPredicted RBP21.64■■□□□ 1.05
PTPRF-207ENST00000436724 HTR7P34969 479 aa21.64■■□□□ 1.05
PTPRF-207ENST00000436724 PPM1AP35813 382 aa21.64■■□□□ 1.05
PTPRF-207ENST00000436724 ATP5C1P36542 298 aaKnown RBP21.64■■□□□ 1.05
PTPRF-207ENST00000436724 PPIGQ13427 754 aaKnown RBP eCLIP21.64■■□□□ 1.053e-7■■□□□ 11.9
PTPRF-207ENST00000436724 SPARCL1Q14515 664 aa21.64■■□□□ 1.05
PTPRF-207ENST00000436724 PARP6Q2NL67 630 aa21.64■■□□□ 1.05
PTPRF-207ENST00000436724 FBXL22Q6P050 247 aa21.64■■□□□ 1.05
PTPRF-207ENST00000436724 EXOC3L1Q86VI1 746 aa21.64■■□□□ 1.05
PTPRF-207ENST00000436724 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.64■■□□□ 1.05
PTPRF-207ENST00000436724 FBF1Q8TES7 1133 aa21.64■■□□□ 1.05
PTPRF-207ENST00000436724 USP33Q8TEY7 942 aa21.64■■□□□ 1.05
PTPRF-207ENST00000436724 ZNF419Q96HQ0 510 aaPredicted RBP21.64■■□□□ 1.05
PTPRF-207ENST00000436724 NACA2Q9H009 215 aa21.64■■□□□ 1.05
PTPRF-207ENST00000436724 DOCK4Q8N1I0 1966 aa21.63■■□□□ 1.05
PTPRF-207ENST00000436724 COCHO43405 550 aa21.63■■□□□ 1.05
PTPRF-207ENST00000436724 JCHAINP01591 159 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms