RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 FOXO6A8MYZ6 492 aa12.02□□□□□ -0.48
SKA3-203ENST00000400018 DESP17661 470 aa12.02□□□□□ -0.48
SKA3-203ENST00000400018 RPL22P35268 128 aaKnown RBP12.02□□□□□ -0.48
SKA3-203ENST00000400018 ITGA8P53708 1063 aa12.02□□□□□ -0.48
SKA3-203ENST00000400018 MLLT6P55198 1093 aaPredicted RBP12.02□□□□□ -0.48
SKA3-203ENST00000400018 FASTKD3Q14CZ7 662 aaKnown RBP12.02□□□□□ -0.48
SKA3-203ENST00000400018 NOMO1Q15155 1222 aa12.02□□□□□ -0.48
SKA3-203ENST00000400018 PABPC1LQ4VXU2 614 aaKnown RBP12.02□□□□□ -0.48
SKA3-203ENST00000400018 TMCO3Q6UWJ1 677 aa12.02□□□□□ -0.48
SKA3-203ENST00000400018 ZDHHC24Q6UX98 284 aa12.02□□□□□ -0.48
SKA3-203ENST00000400018 LINGO4Q6UY18 593 aa12.02□□□□□ -0.48
SKA3-203ENST00000400018 CCNI2Q6ZMN8 369 aaPredicted RBP12.02□□□□□ -0.48
SKA3-203ENST00000400018 SPNS2Q8IVW8 549 aa12.02□□□□□ -0.48
SKA3-203ENST00000400018 OR7D4Q8NG98 312 aa12.02□□□□□ -0.48
SKA3-203ENST00000400018 PGAP3Q96FM1 320 aaPredicted RBP12.02□□□□□ -0.48
SKA3-203ENST00000400018 EXOC2Q96KP1 924 aa12.02□□□□□ -0.48
SKA3-203ENST00000400018 ERP44Q9BS26 406 aa12.02□□□□□ -0.48
SKA3-203ENST00000400018 ZNF670Q9BS34 389 aa12.02□□□□□ -0.48
SKA3-203ENST00000400018 NOL6Q9H6R4 1146 aaKnown RBP12.02□□□□□ -0.48
SKA3-203ENST00000400018 CLIC5Q9NZA1 410 aa12.02□□□□□ -0.48
SKA3-203ENST00000400018 APOEP02649 317 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 IVDP26440 423 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 CHRNA3P32297 505 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 CRADDP78560 199 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 ZBTB17Q13105 803 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 PDK2Q15119 407 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 TRIP4Q15650 581 aaPredicted RBP12.02□□□□□ -0.49
SKA3-203ENST00000400018 PPP2R5EQ16537 467 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 CCNG2Q16589 344 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 RSAD2Q8WXG1 361 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 CALR3Q96L12 384 aaKnown RBP12.02□□□□□ -0.49
SKA3-203ENST00000400018 MYRFLQ96LU7 910 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 KLF16Q9BXK1 252 aaPredicted RBP12.02□□□□□ -0.49
SKA3-203ENST00000400018 USP29Q9HBJ7 922 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.02□□□□□ -0.49
SKA3-203ENST00000400018 DONSONQ9NYP3 566 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 RNF14Q9UBS8 474 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 WNT6Q9Y6F9 365 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 F5P12259 2224 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 H3BRJ5 948 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 CCDC188H7C350 402 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 MCF2LO15068 1137 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 F9P00740 461 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 TACR2P21452 398 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 CETN2P41208 172 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 TNK2Q07912 1038 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 SMARCB1Q12824 385 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 TUBB2AQ13885 445 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 CYP1B1Q16678 543 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 DUPD1Q68J44 220 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 OTOP3Q7RTS5 596 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 PNPLA1Q8N8W4 532 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 ATL2Q8NHH9 583 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 MRRFQ96E11 262 aaKnown RBP12.02□□□□□ -0.49
SKA3-203ENST00000400018 HMCESQ96FZ2 354 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 NAP1L3Q99457 506 aaPredicted RBP12.02□□□□□ -0.49
SKA3-203ENST00000400018 RPP25Q9BUL9 199 aaKnown RBP12.02□□□□□ -0.49
SKA3-203ENST00000400018 TUBB2BQ9BVA1 445 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 SUFUQ9UMX1 484 aa12.02□□□□□ -0.49
SKA3-203ENST00000400018 OBSL1O75147 1896 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 MTCL1Q9Y4B5 1905 aaKnown RBP12.01□□□□□ -0.49
SKA3-203ENST00000400018 PTPRRQ15256 657 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 MSANTD2Q6P1R3 559 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 ARID3BQ8IVW6 561 aaPredicted RBP12.01□□□□□ -0.49
SKA3-203ENST00000400018 SFTPA1Q8IWL2 248 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 ARHGAP12Q8IWW6 846 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 ALLCQ8N6M5 410 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 SH3RF2Q8TEC5 729 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 MRPS31Q92665 395 aaKnown RBP12.01□□□□□ -0.49
SKA3-203ENST00000400018 FAF2Q96CS3 445 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 SMIM14Q96QK8 99 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 EPAS1Q99814 870 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 SPON2Q9BUD6 331 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 BRD8Q9H0E9 1235 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 ADAM7Q9H2U9 754 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 UTP11Q9Y3A2 253 aaKnown RBP12.01□□□□□ -0.49
SKA3-203ENST00000400018 NEU2Q9Y3R4 380 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 GOLGA8CPA6NN73 597 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 GREM1O60565 184 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 PAPOLAP51003 745 aaKnown RBP12.01□□□□□ -0.49
SKA3-203ENST00000400018 GPS2Q13227 327 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 CCDC149Q6ZUS6 474 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 ZNF683Q8IZ20 524 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 ELMOD1Q8N336 334 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 CARNMT1Q8N4J0 409 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 CCDC89Q8N998 374 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 SPATA22Q8NHS9 363 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 CCDC26Q8TAB7 109 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 USP13Q92995 863 aaPredicted RBP12.01□□□□□ -0.49
SKA3-203ENST00000400018 PABPC5Q96DU9 382 aaKnown RBP12.01□□□□□ -0.49
SKA3-203ENST00000400018 CLDND1Q9NY35 253 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 IL1RAPL1Q9NZN1 696 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 PCYOX1Q9UHG3 505 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 LZTS1Q9Y250 596 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 ATP8A1Q9Y2Q0 1164 aa12.01□□□□□ -0.49
SKA3-203ENST00000400018 MRPS23Q9Y3D9 190 aaKnown RBP12.01□□□□□ -0.49
SKA3-203ENST00000400018 OTOL1A6NHN0 477 aaPredicted RBP12□□□□□ -0.49
SKA3-203ENST00000400018 LEFTY2O00292 366 aa12□□□□□ -0.49
SKA3-203ENST00000400018 SNAP91O60641 907 aa12□□□□□ -0.49
SKA3-203ENST00000400018 TMEM63AO94886 807 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms