RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	SYDE1	Q6ZW31	735 aa	Predicted RBP	9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	PSTK	Q8IV42	348 aa	Known RBP	9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	SLC44A3	Q8N4M1	653 aa		9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	9.83	□□□□□ -0.84	5e-7	■■■■■ 62.3
PDLIM5-223	ENST00000627587	SMG7	Q92540	1137 aa	Known RBP	9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	CAVIN3	Q969G5	261 aa		9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	NTAN1	Q96AB6	310 aa		9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	SPATA17	Q96L03	361 aa		9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	CSPG4P5	Q96PW8	444 aa		9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	SEPT5	Q99719	369 aa	Predicted RBP	9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	FAM204A	Q9H8W3	233 aa		9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	FAM114A2	Q9NRY5	505 aa		9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ABCC13	Q9NSE7	274 aa		9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ETNK2	Q9NVF9	386 aa		9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	DDIT4	Q9NX09	232 aa		9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	FBXW11	Q9UKB1	542 aa		9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	SNX24	Q9Y343	169 aa		9.83	□□□□□ -0.84
PDLIM5-223	ENST00000627587	LMNA	P02545	664 aa	Known RBP	9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ITGAV	P06756	1048 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	GOT1	P17174	413 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ADRA1B	P35368	520 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	AIF1	P55008	147 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	GDF10	P55107	478 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	RPL10A	P62906	217 aa	Known RBP	9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	SLC10A2	Q12908	348 aa	Predicted RBP	9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	CASP8	Q14790	479 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	NOMO1	Q15155	1222 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	TRIP13	Q15645	432 aa	Predicted RBP	9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	FAM182A	Q5T1J6	154 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	EMB	Q6PCB8	327 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	DENND5B	Q6ZUT9	1274 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	SND1	Q7KZF4	910 aa	Known RBP eCLIP	9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ALLC	Q8N6M5	410 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	TSEN2	Q8NCE0	465 aa	Known RBP	9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	SHD	Q96IW2	340 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	TMEM121	Q9BTD3	319 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	PRKD2	Q9BZL6	878 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	GMIP	Q9P107	970 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	NUDT5	Q9UKK9	219 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	NEU3	Q9UQ49	428 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	MTCL1	Q9Y4B5	1905 aa	Known RBP	9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	SHROOM3	Q8TF72	1996 aa		9.82	□□□□□ -0.84
PDLIM5-223	ENST00000627587	DOCK6	Q96HP0	2047 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	IRAK2	O43187	625 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	MSI1	O43347	362 aa	Known RBP	9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ATP8B1	O43520	1251 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	RTN3	O95197	1032 aa	Predicted RBP	9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ZSCAN5DP	P0CG00	497 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	LAMP2	P13473	410 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ETS1	P14921	441 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	GBP1	P32455	592 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ARL4A	P40617	200 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	TNNT3	P45378	269 aa	Predicted RBP	9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	NRL	P54845	237 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ARL13B	Q3SXY8	428 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	EFHC2	Q5JST6	749 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	NCBP2-AS2	Q69YL0	99 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	LILRA6	Q6PI73	481 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	RHBDF2	Q6PJF5	856 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ZC3H14	Q6PJT7	736 aa	Known RBP	9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	B4GALNT4	Q76KP1	1039 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	RTL10	Q7L3V2	364 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	GSTA5	Q7RTV2	222 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	MON1A	Q86VX9	555 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ARHGAP18	Q8N392	663 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	FBXO25	Q8TCJ0	367 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	TXLNGY	Q9BZA5	131 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ARHGEF4	Q9NR80	690 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	SLC2A4RG	Q9NR83	387 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	SFMBT1	Q9UHJ3	866 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ZNF148	Q9UQR1	794 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	DRG1	Q9Y295	367 aa	Known RBP	9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	NYNRIN	Q9P2P1	1898 aa	Known RBP	9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ANHX	E9PGG2	379 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	APOL1	O14791	398 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	MAP3K6	O95382	1288 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ZDHHC11B	P0C7U3	371 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	YWHAQ	P27348	245 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	TUFM	P49411	452 aa	Known RBP	9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	GBE1	Q04446	702 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	DPYS	Q14117	519 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	MSANTD2	Q6P1R3	559 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	HDX	Q7Z353	690 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	UNC45B	Q8IWX7	931 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ZNF461	Q8TAF7	563 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	RNF139	Q8WU17	664 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	P3H4	Q92791	437 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ART4	Q93070	314 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	TTLL2	Q9BWV7	592 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	WDCP	Q9H6R7	721 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	COMMD8	Q9NX08	183 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	RCOR3	Q9P2K3	495 aa	Predicted RBP	9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	AFF4	Q9UHB7	1163 aa	Known RBP	9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	ASIC3	Q9UHC3	531 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	SIT1	Q9Y3P8	196 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	SNX10	Q9Y5X0	201 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	FAM186A	A6NE01	2351 aa		9.81	□□□□□ -0.84
PDLIM5-223	ENST00000627587	C2orf16	Q68DN1	1984 aa		9.8	□□□□□ -0.84
PDLIM5-223	ENST00000627587	KRBA1	A5PL33	1030 aa		9.8	□□□□□ -0.84

Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms