RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 KREMEN1Q96MU8 473 aa24.81■■□□□ 1.56
LSM4-202ENST00000593564 INTS6Q9UL03 887 aaKnown RBP24.81■■□□□ 1.56
LSM4-202ENST00000593564 SCML1Q9UN30 329 aa24.81■■□□□ 1.56
LSM4-202ENST00000593564 CNTN6Q9UQ52 1028 aa24.81■■□□□ 1.56
LSM4-202ENST00000593564 ANKRD6Q9Y2G4 727 aa24.81■■□□□ 1.56
LSM4-202ENST00000593564 SNX11Q9Y5W9 270 aa24.81■■□□□ 1.56
LSM4-202ENST00000593564 CABIN1Q9Y6J0 2220 aa24.81■■□□□ 1.56
LSM4-202ENST00000593564 BICDL2A1A5D9 508 aa24.8■■□□□ 1.56
LSM4-202ENST00000593564 PPP1R3GB7ZBB8 358 aa24.8■■□□□ 1.56
LSM4-202ENST00000593564 FSBPO95073 299 aa24.8■■□□□ 1.56
LSM4-202ENST00000593564 BMP6P22004 513 aa24.8■■□□□ 1.56
LSM4-202ENST00000593564 SCAPQ12770 1279 aa24.8■■□□□ 1.56
LSM4-202ENST00000593564 CDH18Q13634 790 aa24.8■■□□□ 1.56
LSM4-202ENST00000593564 HNRNPA1L2Q32P51 320 aaKnown RBP24.8■■□□□ 1.56
LSM4-202ENST00000593564 MS4A13Q5J8X5 152 aa24.8■■□□□ 1.56
LSM4-202ENST00000593564 CCNI2Q6ZMN8 369 aaPredicted RBP24.8■■□□□ 1.56
LSM4-202ENST00000593564 USP30Q70CQ3 517 aa24.8■■□□□ 1.56
LSM4-202ENST00000593564 PROSER1Q86XN7 944 aa24.8■■□□□ 1.56
LSM4-202ENST00000593564 TRIM59Q8IWR1 403 aa24.8■■□□□ 1.56
LSM4-202ENST00000593564 SCUBE3Q8IX30 993 aa24.8■■□□□ 1.56
LSM4-202ENST00000593564 FAM149B1Q96BN6 582 aa24.8■■□□□ 1.56
LSM4-202ENST00000593564 CDC6Q99741 560 aa24.8■■□□□ 1.56
LSM4-202ENST00000593564 NUCKS1Q9H1E3 243 aaKnown RBP24.8■■□□□ 1.56
LSM4-202ENST00000593564 PABPC3Q9H361 631 aaKnown RBP24.8■■□□□ 1.56
LSM4-202ENST00000593564 MTG2Q9H4K7 406 aa24.8■■□□□ 1.56
LSM4-202ENST00000593564 NAALADL1Q9UQQ1 740 aa24.8■■□□□ 1.56
LSM4-202ENST00000593564 TAF4O00268 1085 aa24.79■■□□□ 1.56
LSM4-202ENST00000593564 ACADSBP45954 432 aa24.79■■□□□ 1.56
LSM4-202ENST00000593564 KCNH2Q12809 1159 aa24.79■■□□□ 1.56
LSM4-202ENST00000593564 ARID5BQ14865 1188 aa24.79■■□□□ 1.56
LSM4-202ENST00000593564 SUZ12Q15022 739 aaKnown RBP24.79■■□□□ 1.56
LSM4-202ENST00000593564 MEA1Q16626 185 aa24.79■■□□□ 1.56
LSM4-202ENST00000593564 TAC4Q86UU9 113 aa24.79■■□□□ 1.56
LSM4-202ENST00000593564 CCDC117Q8IWD4 279 aaPredicted RBP24.79■■□□□ 1.56
LSM4-202ENST00000593564 CARNMT1Q8N4J0 409 aa24.79■■□□□ 1.56
LSM4-202ENST00000593564 RHBDD1Q8TEB9 315 aa24.79■■□□□ 1.56
LSM4-202ENST00000593564 STK32AQ8WU08 396 aa24.79■■□□□ 1.56
LSM4-202ENST00000593564 MRGPRX3Q96LB0 322 aa24.79■■□□□ 1.56
LSM4-202ENST00000593564 ORAI3Q9BRQ5 295 aa24.79■■□□□ 1.56
LSM4-202ENST00000593564 TRIM62Q9BVG3 475 aa24.79■■□□□ 1.56
LSM4-202ENST00000593564 ST7Q9NRC1 585 aa24.79■■□□□ 1.56
LSM4-202ENST00000593564 CTNND2Q9UQB3 1225 aa24.79■■□□□ 1.56
LSM4-202ENST00000593564 NCKAP1Q9Y2A7 1128 aa24.79■■□□□ 1.56
LSM4-202ENST00000593564 GNA14O95837 355 aa24.78■■□□□ 1.56
LSM4-202ENST00000593564 MARSP56192 900 aaKnown RBP24.78■■□□□ 1.56
LSM4-202ENST00000593564 ADAM32Q8TC27 787 aa24.78■■□□□ 1.56
LSM4-202ENST00000593564 IGSF8Q969P0 613 aa24.78■■□□□ 1.56
LSM4-202ENST00000593564 INTS2Q9H0H0 1204 aaKnown RBP24.78■■□□□ 1.56
LSM4-202ENST00000593564 TOR4AQ9NXH8 423 aa24.78■■□□□ 1.56
LSM4-202ENST00000593564 RNASEH1O60930 286 aaKnown RBP24.77■■□□□ 1.56
LSM4-202ENST00000593564 SIN3BO75182 1162 aa24.77■■□□□ 1.56
LSM4-202ENST00000593564 DKK1O94907 266 aa24.77■■□□□ 1.56
LSM4-202ENST00000593564 LUC7L3O95232 432 aaKnown RBP24.77■■□□□ 1.56
LSM4-202ENST00000593564 MOCS2O96007 188 aaPredicted RBP24.77■■□□□ 1.56
LSM4-202ENST00000593564 AFPP02771 609 aaKnown RBP24.77■■□□□ 1.56
LSM4-202ENST00000593564 IGHV4-34P06331 123 aa24.77■■□□□ 1.56
LSM4-202ENST00000593564 KRT5P13647 590 aa24.77■■□□□ 1.56
LSM4-202ENST00000593564 SFSWAPQ12872 951 aaKnown RBP24.77■■□□□ 1.56
LSM4-202ENST00000593564 MORC3Q14149 939 aa24.77■■□□□ 1.56
LSM4-202ENST00000593564 DCAF6Q58WW2 860 aa24.77■■□□□ 1.56
LSM4-202ENST00000593564 FSCBQ5H9T9 825 aa24.77■■□□□ 1.56
LSM4-202ENST00000593564 PITRM1Q5JRX3 1037 aa24.77■■□□□ 1.56
LSM4-202ENST00000593564 SYPL2Q5VXT5 272 aa24.77■■□□□ 1.56
LSM4-202ENST00000593564 KIAA0895LQ68EN5 471 aa24.77■■□□□ 1.56
LSM4-202ENST00000593564 DENND1BQ6P3S1 775 aa24.77■■□□□ 1.56
LSM4-202ENST00000593564 CFAP52Q8N1V2 620 aa24.77■■□□□ 1.56
LSM4-202ENST00000593564 SLC4A5Q9BY07 1137 aa24.77■■□□□ 1.56
LSM4-202ENST00000593564 FBXL12Q9NXK8 326 aa24.77■■□□□ 1.56
LSM4-202ENST00000593564 ERVW-1Q9UQF0 538 aa24.77■■□□□ 1.56
LSM4-202ENST00000593564 UTP18Q9Y5J1 556 aaKnown RBP eCLIP24.77■■□□□ 1.56
LSM4-202ENST00000593564 APOEP02649 317 aa24.76■■□□□ 1.55
LSM4-202ENST00000593564 SRPRAP08240 638 aaKnown RBP24.76■■□□□ 1.55
LSM4-202ENST00000593564 CCT8P50990 548 aa24.76■■□□□ 1.55
LSM4-202ENST00000593564 BECN1Q14457 450 aa24.76■■□□□ 1.55
LSM4-202ENST00000593564 C9orf64Q5T6V5 341 aa24.76■■□□□ 1.55
LSM4-202ENST00000593564 LAYNQ6UX15 382 aa24.76■■□□□ 1.55
LSM4-202ENST00000593564 MMS22LQ6ZRQ5 1243 aa24.76■■□□□ 1.55
LSM4-202ENST00000593564 DHX40Q8IX18 779 aaKnown RBP24.76■■□□□ 1.55
LSM4-202ENST00000593564 GANCQ8TET4 914 aa24.76■■□□□ 1.55
LSM4-202ENST00000593564 SERGEFQ9UGK8 458 aa24.76■■□□□ 1.55
LSM4-202ENST00000593564 XPO7Q9UIA9 1087 aaKnown RBP24.76■■□□□ 1.55
LSM4-202ENST00000593564 BTBD3Q9Y2F9 522 aa24.76■■□□□ 1.55
LSM4-202ENST00000593564 ATRXP46100 2492 aa24.76■■□□□ 1.55
LSM4-202ENST00000593564 TARSL2A2RTX5 802 aaKnown RBP24.75■■□□□ 1.55
LSM4-202ENST00000593564 CAPN9O14815 690 aa24.75■■□□□ 1.55
LSM4-202ENST00000593564 PAPSS1O43252 624 aaPredicted RBP24.75■■□□□ 1.55
LSM4-202ENST00000593564 MED7O43513 233 aa24.75■■□□□ 1.55
LSM4-202ENST00000593564 PCDHGA12O60330 932 aa24.75■■□□□ 1.55
LSM4-202ENST00000593564 MOCS3O95396 460 aa24.75■■□□□ 1.55
LSM4-202ENST00000593564 ATXN1LP0C7T5 689 aaKnown RBP24.75■■□□□ 1.55
LSM4-202ENST00000593564 CTSKP43235 329 aa24.75■■□□□ 1.55
LSM4-202ENST00000593564 PAK1Q13153 545 aa24.75■■□□□ 1.55
LSM4-202ENST00000593564 CST6Q15828 149 aa24.75■■□□□ 1.55
LSM4-202ENST00000593564 TMPRSS7Q7RTY8 843 aa24.75■■□□□ 1.55
LSM4-202ENST00000593564 ADAT2Q7Z6V5 191 aaKnown RBP24.75■■□□□ 1.55
LSM4-202ENST00000593564 LGI2Q8N0V4 545 aa24.75■■□□□ 1.55
LSM4-202ENST00000593564 BTN2A3PQ96KV6 586 aa24.75■■□□□ 1.55
LSM4-202ENST00000593564 POPDC2Q9HBU9 364 aa24.75■■□□□ 1.55
LSM4-202ENST00000593564 ITIH6Q6UXX5 1313 aa24.75■■□□□ 1.55
LSM4-202ENST00000593564 A0A1W2PPC4 97 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms