RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 RPL7AP62424 266 aaKnown RBP19.96■□□□□ 0.79
SS18-208ENST00000577751 LMAN2Q12907 356 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 E2F5Q15329 346 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 RAB6CQ53S08 254 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 TDRD12Q587J7 1177 aaKnown RBP19.96■□□□□ 0.79
SS18-208ENST00000577751 FSCBQ5H9T9 825 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 ARTNQ5T4W7 220 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 PLEKHA7Q6IQ23 1121 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 SDE2Q6IQ49 451 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 C14orf80Q86SX3 495 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 DNAAF5Q86Y56 855 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 DRC7Q8IY82 874 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 ZNF683Q8IZ20 524 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 SIK2Q9H0K1 926 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 RAB6CQ9H0N0 254 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 POLMQ9NP87 494 aaPredicted RBP19.96■□□□□ 0.79
SS18-208ENST00000577751 TMPRSS4Q9NRS4 437 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 ADAMTS1Q9UHI8 967 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 VANGL2Q9ULK5 521 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 STON1Q9Y6Q2 735 aa19.96■□□□□ 0.79
SS18-208ENST00000577751 A0A1B0GVM2 712 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 PRR23AA6NEV1 266 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 TCAF2A6NFQ2 919 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 WASH3PC4AMC7 463 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 AXIN1O15169 862 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 PLEKP08567 350 aaPredicted RBP19.95■□□□□ 0.78
SS18-208ENST00000577751 HOXB2P14652 356 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 GGCXP38435 758 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 WASP42768 502 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 MRE11P49959 708 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 ZNF143P52747 638 aaPredicted RBP19.95■□□□□ 0.78
SS18-208ENST00000577751 HDAC4P56524 1084 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 MAMLD1Q13495 774 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 CDH18Q13634 790 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 ZNF234Q14588 700 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 RABGAP1LQ5R372 815 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 MBLAC2Q68D91 279 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 CHST9Q7L1S5 443 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 ASCL5Q7RTU5 278 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 FAM131BQ86XD5 332 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 CCAR2Q8N163 923 aaKnown RBP19.95■□□□□ 0.78
SS18-208ENST00000577751 CARNMT1Q8N4J0 409 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 SORCS1Q8WY21 1168 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 TTC17Q96AE7 1141 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 RPRD1AQ96P16 312 aaPredicted RBP19.95■□□□□ 0.78
SS18-208ENST00000577751 MCEEQ96PE7 176 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 CIPCQ9C0C6 399 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 RBSNQ9H1K0 784 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 PARVAQ9NVD7 372 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 CACNA2D2Q9NY47 1150 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 ARHGAP20Q9P2F6 1191 aa19.95■□□□□ 0.78
SS18-208ENST00000577751 INTS6Q9UL03 887 aaKnown RBP19.95■□□□□ 0.78
SS18-208ENST00000577751 MUC22E2RYF6 1773 aaPredicted RBP19.95■□□□□ 0.78
SS18-208ENST00000577751 DOCK4Q8N1I0 1966 aa19.94■□□□□ 0.78
SS18-208ENST00000577751 DRGXA6NNA5 263 aa19.94■□□□□ 0.78
SS18-208ENST00000577751 H0Y626 953 aa19.94■□□□□ 0.78
SS18-208ENST00000577751 LMNAP02545 664 aaKnown RBP19.94■□□□□ 0.78
SS18-208ENST00000577751 HOXD11P31277 338 aaPredicted RBP19.94■□□□□ 0.78
SS18-208ENST00000577751 IL12RB1P42701 662 aa19.94■□□□□ 0.78
SS18-208ENST00000577751 IRAK1P51617 712 aa19.94■□□□□ 0.78
SS18-208ENST00000577751 SRSF5Q13243 272 aaKnown RBP19.94■□□□□ 0.78
SS18-208ENST00000577751 CDO1Q16878 200 aa19.94■□□□□ 0.78
SS18-208ENST00000577751 FUT11Q495W5 492 aa19.94■□□□□ 0.78
SS18-208ENST00000577751 ANO7Q6IWH7 933 aa19.94■□□□□ 0.78
SS18-208ENST00000577751 ALYREFQ86V81 257 aaKnown RBP19.94■□□□□ 0.78
SS18-208ENST00000577751 VPS36Q86VN1 386 aa19.94■□□□□ 0.78
SS18-208ENST00000577751 CCDC117Q8IWD4 279 aaPredicted RBP19.94■□□□□ 0.78
SS18-208ENST00000577751 MDGA1Q8NFP4 955 aa19.94■□□□□ 0.78
SS18-208ENST00000577751 FAM172AQ8WUF8 416 aa19.94■□□□□ 0.78
SS18-208ENST00000577751 DNAJC7Q99615 494 aa19.94■□□□□ 0.78
SS18-208ENST00000577751 KIAA1522Q9P206 1035 aaPredicted RBP19.94■□□□□ 0.78
SS18-208ENST00000577751 IGLV3-10A0A075B6K4 115 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 A0A087X0T9 212 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 ALDH1A2O94788 518 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 FAM228BP0C875 321 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 ADRA1BP35368 520 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 PLK1P53350 603 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 SLC12A1Q13621 1099 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 PTPRNQ16849 979 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 CXorf57Q6NSI4 855 aaKnown RBP19.93■□□□□ 0.78
SS18-208ENST00000577751 KIAA1211LQ6NV74 962 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 DCUN1D2Q6PH85 259 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 CIR1Q86X95 450 aaPredicted RBP19.93■□□□□ 0.78
SS18-208ENST00000577751 GAS2L3Q86XJ1 694 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 OR8K1Q8NGG5 319 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 GAB3Q8WWW8 586 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 CNPY3Q9BT09 278 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.93■□□□□ 0.78
SS18-208ENST00000577751 SNX10Q9Y5X0 201 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 CKAP5Q14008 2032 aa19.93■□□□□ 0.78
SS18-208ENST00000577751 TCRBV21S2A2A0A5A6 115 aa19.92■□□□□ 0.78
SS18-208ENST00000577751 ANKRD62A6NC57 917 aa19.92■□□□□ 0.78
SS18-208ENST00000577751 TMEM191CA6NGB0 347 aa19.92■□□□□ 0.78
SS18-208ENST00000577751 CCP110O43303 1012 aa19.92■□□□□ 0.78
SS18-208ENST00000577751 ATMINO43313 823 aaPredicted RBP19.92■□□□□ 0.78
SS18-208ENST00000577751 GFRA3O60609 400 aa19.92■□□□□ 0.78
SS18-208ENST00000577751 CLDN11O75508 207 aa19.92■□□□□ 0.78
SS18-208ENST00000577751 ATP5BP06576 529 aaKnown RBP19.92■□□□□ 0.78
SS18-208ENST00000577751 DLDP09622 509 aaKnown RBP19.92■□□□□ 0.78
SS18-208ENST00000577751 MYBL1P10243 752 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms