RNA–Protein interactions for RNA: ENST00000557539.1

MTHFD1-216, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 4

Gene MTHFD1, Length 509 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-216ENST00000557539 ERV3-1Q14264 604 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 SMAD1Q15797 465 aaKnown RBP5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 RNF151Q2KHN1 245 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 ZNF568Q3ZCX4 644 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 TRIM60Q495X7 471 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 GALNTL6Q49A17 601 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 TBC1D10BQ4KMP7 808 aaPredicted RBP5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 FAM133BQ5BKY9 247 aaKnown RBP5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 EFCAB12Q6NXP0 572 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 TAF2Q6P1X5 1199 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 TMCO3Q6UWJ1 677 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 B4GALNT4Q76KP1 1039 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 ENOSF1Q7L5Y1 443 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 R3HCC1LQ7Z5L2 792 aaKnown RBP5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 RALYLQ86SE5 291 aaKnown RBP5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 SPARTQ8N0X7 666 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 PSD4Q8NDX1 1056 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 DNAJB14Q8TBM8 379 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 ABHD5Q8WTS1 349 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 HMGB4Q8WW32 186 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 STAMQ92783 540 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 LSM14BQ9BX40 385 aaKnown RBP5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 UNKLQ9H9P5 680 aaKnown RBP5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 NSMCE4AQ9NXX6 385 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 NKIRAS2Q9NYR9 191 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 DNAJB11Q9UBS4 358 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 COG5Q9UP83 839 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 CNTN6Q9UQ52 1028 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 CYP46A1Q9Y6A2 500 aa5.4□□□□□ -1.54
MTHFD1-216ENST00000557539 IGSF10Q6WRI0 2623 aa5.4□□□□□ -1.55
MTHFD1-216ENST00000557539 COL11A2P13942 1736 aaPredicted RBP5.4□□□□□ -1.55
MTHFD1-216ENST00000557539 ANKRD50Q9ULJ7 1429 aa5.4□□□□□ -1.55
MTHFD1-216ENST00000557539 LOC400499M0QZD8 3231 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 POLR2AP24928 1970 aaKnown RBP5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 SYNDIG1LA6NDD5 238 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 KIF28PB7ZC32 967 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 TAF4O00268 1085 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 KLK10O43240 276 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 MYCLP12524 364 aaPredicted RBP5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 CHMP24386 653 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 ABCD3P28288 659 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 NTSR1P30989 418 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 NBL1P41271 181 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 GCLCP48506 637 aaPredicted RBP5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 DGKEP52429 567 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 TERF1P54274 439 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 CXCL9Q07325 125 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 MYO1EQ12965 1108 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 NFYCQ13952 458 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 CTXN3Q4LDR2 81 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 SPECC1Q5M775 1068 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 CFAP58Q5T655 872 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 MFSD4BQ5TF39 518 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 SYNE3Q6ZMZ3 975 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 KRT77Q7Z794 578 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 LSMEM1Q8N8F7 131 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 TXNDC5Q8NBS9 432 aaKnown RBP5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 SHCBP1Q8NEM2 672 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 ZMIZ2Q8NF64 920 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 BORCS6Q96GS4 357 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 ZNF512Q96ME7 567 aaPredicted RBP5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 GPR20Q99678 358 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 CPPED1Q9BRF8 314 aaPredicted RBP5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 C12orf65Q9H3J6 166 aaKnown RBP5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 GHITMQ9H3K2 345 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 HAUS2Q9NVX0 235 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 NTMQ9P121 344 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 HSF4Q9ULV5 492 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 NOL7Q9UMY1 257 aaKnown RBP5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 CDHR2Q9BYE9 1310 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 NPC1L1Q9UHC9 1359 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 PIK3C2GO75747 1445 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 RELNP78509 3460 aa5.39□□□□□ -1.55
MTHFD1-216ENST00000557539 VWA3AA6NCI4 1184 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 DRGXA6NNA5 263 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 CD3EAPO15446 510 aaKnown RBP5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 PLOD3O60568 738 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 TSPAN3O60637 253 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 SEMA7AO75326 666 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 CER1O95813 267 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 HK1P19367 917 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 PGM1P36871 562 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 STAT1P42224 750 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 NPTX2P47972 431 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 CHN2P52757 468 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 LOXL3P58215 753 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 ARF3P61204 181 aaPredicted RBP5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 ARF1P84077 181 aaKnown RBP5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 ZNF844Q08AG5 666 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 SF3A3Q12874 501 aaKnown RBP eCLIP5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 CSHL1Q14406 222 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 GPR68Q15743 365 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 CSRP2Q16527 193 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 P3H1Q32P28 736 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 ALDH1L2Q3SY69 923 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 SOWAHCQ53LP3 525 aaPredicted RBP5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 TMEM108Q6UXF1 575 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 DOK3Q7L591 496 aa5.38□□□□□ -1.55
MTHFD1-216ENST00000557539 FAM83AQ86UY5 434 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms