RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 C1SP09871 688 aa18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 MXI1P50539 228 aa18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 DAOAP59103 153 aa18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 SEMG2Q02383 582 aa18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 C19orf57Q0VDD7 668 aa18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 CST6Q15828 149 aa18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 HNRNPA1L2Q32P51 320 aaKnown RBP18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 MSANTD2Q6P1R3 559 aa18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 FBXL19Q6PCT2 694 aa18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 DHX40Q8IX18 779 aaKnown RBP18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 SCML4Q8N228 414 aa18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 UBA3Q8TBC4 463 aa18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 KCTD13Q8WZ19 329 aa18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 TSC1Q92574 1164 aa18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 MYEOVQ96EZ4 313 aa18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 PRICKLE1Q96MT3 831 aaPredicted RBP18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 IPO9Q96P70 1041 aaKnown RBP18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 ADAMTS1Q9UHI8 967 aa18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 HPSEQ9Y251 543 aa18.51■□□□□ 0.55
CLSTN3-214ENST00000542663 TENM4Q6N022 2769 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 FLNBO75369 2602 aaKnown RBP18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 ITGAVP06756 1048 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 ABCB4P21439 1286 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 CD38P28907 300 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 CSKP41240 450 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 DNM1Q05193 864 aaKnown RBP18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 TARDBPQ13148 414 aaKnown RBP eCLIP18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 PKP1Q13835 747 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 RTP5Q14D33 572 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 PKDCCQ504Y2 493 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 SGO2Q562F6 1265 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 C9orf64Q5T6V5 341 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 HES3Q5TGS1 186 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 ATL3Q6DD88 541 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 NADSYN1Q6IA69 706 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 MFN1Q8IWA4 741 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 GUF1Q8N442 669 aaKnown RBP18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 EID2Q8N6I1 236 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 OR2T34Q8NGX1 318 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 FIBINQ8TAL6 211 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 GANCQ8TET4 914 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 EEF2KMTQ96G04 330 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 IRX2Q9BZI1 471 aaPredicted RBP18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 USP25Q9UHP3 1055 aa18.5■□□□□ 0.55
CLSTN3-214ENST00000542663 ACSL4O60488 711 aa18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 CDK4P11802 303 aa18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 RPL13P26373 211 aaKnown RBP18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 EPHA8P29322 1005 aaPredicted RBP18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 ARID5BQ14865 1188 aa18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 KANSL1Q7Z3B3 1105 aa18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 MMAAQ8IVH4 418 aaKnown RBP18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 SIX6OS1Q8N1H7 587 aa18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 AADATQ8N5Z0 425 aa18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 UBR7Q8N806 425 aa18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 NRSN2Q9GZP1 204 aa18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 CNGB3Q9NQW8 809 aa18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 AASDHPPTQ9NRN7 309 aa18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 STIM2Q9P246 746 aa18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 HESX1Q9UBX0 185 aa18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 FZD4Q9ULV1 537 aa18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 AK5Q9Y6K8 562 aa18.49■□□□□ 0.55
CLSTN3-214ENST00000542663 LRRC72A6NJI9 287 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 O00370 1275 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 IRAK2O43187 625 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 RNASEH2AO75792 299 aaKnown RBP18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 ASLP04424 464 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 LCP1P13796 627 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 CMA1P23946 247 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 CTSOP43234 321 aaPredicted RBP18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 CCR5P51681 352 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 ST8SIA6P61647 398 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 RPS24P62847 133 aaKnown RBP18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 DPYDQ12882 1025 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 BNIP3Q12983 259 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 CUL2Q13617 745 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 CBWD6Q4V339 395 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 FSCBQ5H9T9 825 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 CBWD3Q5JTY5 395 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 CBWD5Q5RIA9 395 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 SFMBT2Q5VUG0 894 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 NUGGCQ68CJ6 796 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 MMS22LQ6ZRQ5 1243 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 UNC45BQ8IWX7 931 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 HJURPQ8NCD3 748 aaPredicted RBP18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 SNIP1Q8TAD8 396 aaKnown RBP18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 AZIN2Q96A70 460 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 COL26A1Q96A83 441 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 SKA1Q96BD8 255 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 FCRL3Q96P31 734 aaPredicted RBP18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 FAM129BQ96TA1 746 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 GDF3Q9NR23 364 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 CFAP45Q9UL16 551 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 ERVW-1Q9UQF0 538 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 COQ4Q9Y3A0 265 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 ITIH6Q6UXX5 1313 aa18.48■□□□□ 0.55
CLSTN3-214ENST00000542663 TTC34A8MYJ7 566 aa18.47■□□□□ 0.55
CLSTN3-214ENST00000542663 PIK3R2O00459 728 aa18.47■□□□□ 0.55
CLSTN3-214ENST00000542663 YKT6O15498 198 aa18.47■□□□□ 0.55
CLSTN3-214ENST00000542663 RNASEH1O60930 286 aaKnown RBP18.47■□□□□ 0.55
CLSTN3-214ENST00000542663 SETSIPP0DME0 302 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms