RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PTPRBP23467 1997 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 ANKRD11Q6UB99 2663 aaPredicted RBP11.77□□□□□ -0.52
VPS28-214ENST00000531032 NYNRINQ9P2P1 1898 aaKnown RBP11.77□□□□□ -0.53
VPS28-214ENST00000531032 TYW5A2RUC4 315 aaKnown RBP11.77□□□□□ -0.53
VPS28-214ENST00000531032 PPP1R3GB7ZBB8 358 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 TAF4O00268 1085 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 SART1O43290 800 aaKnown RBP11.77□□□□□ -0.53
VPS28-214ENST00000531032 ASLP04424 464 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 CD27P26842 260 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 CSKP41240 450 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 MARSP56192 900 aaKnown RBP11.77□□□□□ -0.53
VPS28-214ENST00000531032 KCNH2Q12809 1159 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 TEAD4Q15561 434 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 MEA1Q16626 185 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 HNRNPA1L2Q32P51 320 aaKnown RBP11.77□□□□□ -0.53
VPS28-214ENST00000531032 MS4A13Q5J8X5 152 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 KLHL10Q6JEL2 608 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 TAC4Q86UU9 113 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 TRIM59Q8IWR1 403 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 SCUBE3Q8IX30 993 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 EHBP1Q8NDI1 1231 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 NELFBQ8WX92 580 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 MRGPRX3Q96LB0 322 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 KREMEN1Q96MU8 473 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 CDC6Q99741 560 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 NUCKS1Q9H1E3 243 aaKnown RBP11.77□□□□□ -0.53
VPS28-214ENST00000531032 PABPC3Q9H361 631 aaKnown RBP11.77□□□□□ -0.53
VPS28-214ENST00000531032 MTG2Q9H4K7 406 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 STIM2Q9P246 746 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 SCML1Q9UN30 329 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 NAALADL1Q9UQQ1 740 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 ANKRD6Q9Y2G4 727 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 SNX11Q9Y5W9 270 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 KNL1Q8NG31 2342 aa11.77□□□□□ -0.53
VPS28-214ENST00000531032 BICDL2A1A5D9 508 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 SIN3BO75182 1162 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 FSBPO95073 299 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 LUC7L3O95232 432 aaKnown RBP11.76□□□□□ -0.53
VPS28-214ENST00000531032 GNA14O95837 355 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 IGHV4-34P06331 123 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 ACADSBP45954 432 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 ST8SIA6P61647 398 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 SCAPQ12770 1279 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 CDH18Q13634 790 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 MORC3Q14149 939 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 SUZ12Q15022 739 aaKnown RBP11.76□□□□□ -0.53
VPS28-214ENST00000531032 FSCBQ5H9T9 825 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 PITRM1Q5JRX3 1037 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 SYPL2Q5VXT5 272 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 LAYNQ6UX15 382 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 CARNMT1Q8N4J0 409 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 ADAM32Q8TC27 787 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 STK32AQ8WU08 396 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 IGSF8Q969P0 613 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 FAM149B1Q96BN6 582 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 TRIM62Q9BVG3 475 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 SLC4A5Q9BY07 1137 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 ST7Q9NRC1 585 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 BTBD3Q9Y2F9 522 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 ITIH6Q6UXX5 1313 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 CABIN1Q9Y6J0 2220 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 PLXNA2O75051 1894 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 CACNA1GO43497 2377 aa11.76□□□□□ -0.53
VPS28-214ENST00000531032 TP53BP1Q12888 1972 aaPredicted RBP11.76□□□□□ -0.53
VPS28-214ENST00000531032 LAMA5O15230 3695 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 C10orf142B7Z368 130 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 PAPSS1O43252 624 aaPredicted RBP11.75□□□□□ -0.53
VPS28-214ENST00000531032 PCDHGA12O60330 932 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 RNASEH1O60930 286 aaKnown RBP11.75□□□□□ -0.53
VPS28-214ENST00000531032 IGLV3-25P01717 112 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 SRPRAP08240 638 aaKnown RBP11.75□□□□□ -0.53
VPS28-214ENST00000531032 ATXN1LP0C7T5 689 aaKnown RBP11.75□□□□□ -0.53
VPS28-214ENST00000531032 CTSKP43235 329 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 CCT8P50990 548 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 CST6Q15828 149 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 DCAF6Q58WW2 860 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 KCNT1Q5JUK3 1230 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 C9orf64Q5T6V5 341 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 KIAA0895LQ68EN5 471 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 DENND1BQ6P3S1 775 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 MMS22LQ6ZRQ5 1243 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 TMPRSS7Q7RTY8 843 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 TMEM110Q86TL2 294 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 CCDC117Q8IWD4 279 aaPredicted RBP11.75□□□□□ -0.53
VPS28-214ENST00000531032 DHX40Q8IX18 779 aaKnown RBP11.75□□□□□ -0.53
VPS28-214ENST00000531032 CFAP52Q8N1V2 620 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 RHBDD1Q8TEB9 315 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 INTS2Q9H0H0 1204 aaKnown RBP11.75□□□□□ -0.53
VPS28-214ENST00000531032 POPDC2Q9HBU9 364 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 FBXL12Q9NXK8 326 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 SERGEFQ9UGK8 458 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 ADAMTS1Q9UHI8 967 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 CYTH4Q9UIA0 394 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 XPO7Q9UIA9 1087 aaKnown RBP11.75□□□□□ -0.53
VPS28-214ENST00000531032 FZD4Q9ULV1 537 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 CTNND2Q9UQB3 1225 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 ERVW-1Q9UQF0 538 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 NCKAP1Q9Y2A7 1128 aa11.75□□□□□ -0.53
VPS28-214ENST00000531032 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.75□□□□□ -0.53
VPS28-214ENST00000531032 ITPR1Q14643 2758 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms