RNA–Protein interactions for RNA: ENST00000529661.1

C11orf88-204, Transcript of chromosome 11 open reading frame 88, humanhuman

TSL 3

Gene C11orf88, Length 624 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf88-204ENST00000529661 LRCH2Q5VUJ6 765 aa5.15□□□□□ -1.59
C11orf88-204ENST00000529661 BBS12Q6ZW61 710 aa5.15□□□□□ -1.59
C11orf88-204ENST00000529661 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.15□□□□□ -1.59
C11orf88-204ENST00000529661 PPHLN1Q8NEY8 458 aaKnown RBP5.15□□□□□ -1.59
C11orf88-204ENST00000529661 PRSS3P2Q8NHM4 247 aa5.15□□□□□ -1.59
C11orf88-204ENST00000529661 HMGB4Q8WW32 186 aa5.15□□□□□ -1.59
C11orf88-204ENST00000529661 SKA1Q96BD8 255 aa5.15□□□□□ -1.59
C11orf88-204ENST00000529661 PRR11Q96HE9 360 aaPredicted RBP5.15□□□□□ -1.59
C11orf88-204ENST00000529661 SEC62Q99442 399 aaKnown RBP5.15□□□□□ -1.59
C11orf88-204ENST00000529661 CINPQ9BW66 212 aaPredicted RBP5.15□□□□□ -1.59
C11orf88-204ENST00000529661 CHODLQ9H9P2 273 aa5.15□□□□□ -1.59
C11orf88-204ENST00000529661 KCNK9Q9NPC2 374 aa5.15□□□□□ -1.59
C11orf88-204ENST00000529661 LIN7CQ9NUP9 197 aaKnown RBP5.15□□□□□ -1.59
C11orf88-204ENST00000529661 PI4KBQ9UBF8 816 aa5.15□□□□□ -1.59
C11orf88-204ENST00000529661 DERAQ9Y315 318 aa5.15□□□□□ -1.59
C11orf88-204ENST00000529661 PCDHB7Q9Y5E2 793 aa5.15□□□□□ -1.59
C11orf88-204ENST00000529661 SLC38A8A6NNN8 435 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 H3BNC9 293 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 KRT38O76015 456 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 CNPP09543 421 aaKnown RBP5.14□□□□□ -1.59
C11orf88-204ENST00000529661 ATF7P17544 494 aaPredicted RBP5.14□□□□□ -1.59
C11orf88-204ENST00000529661 DRD1P21728 446 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 ATP5F1P24539 256 aaPredicted RBP5.14□□□□□ -1.59
C11orf88-204ENST00000529661 GALNSP34059 522 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 MCM2P49736 904 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 MPP1Q00013 466 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 GHRHRQ02643 423 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 SF3A3Q12874 501 aaKnown RBP eCLIP5.14□□□□□ -1.59
C11orf88-204ENST00000529661 SLC14A1Q13336 389 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 SEC23BQ15437 767 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 P3H1Q32P28 736 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 Q4G0T1 1027 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 MAP3K21Q5TCX8 1036 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 PAPD7Q5XG87 772 aaKnown RBP5.14□□□□□ -1.59
C11orf88-204ENST00000529661 USP38Q8NB14 1042 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 SCARB1Q8WTV0 552 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 HIC2Q96JB3 615 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 TWNKQ96RR1 684 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 ADGRE3Q9BY15 652 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 CCDC134Q9H6E4 229 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 SAP30LQ9HAJ7 183 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 NOD2Q9HC29 1040 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 VPS4AQ9UN37 437 aa5.14□□□□□ -1.59
C11orf88-204ENST00000529661 TOP3BO95985 862 aaKnown RBP5.13□□□□□ -1.59
C11orf88-204ENST00000529661 TMIGD3P0DMS9 266 aaPredicted RBP5.13□□□□□ -1.59
C11orf88-204ENST00000529661 XBP1P17861 261 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 RXRAP19793 462 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 MMP8P22894 467 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 RBM6P78332 1123 aaKnown RBP5.13□□□□□ -1.59
C11orf88-204ENST00000529661 TRPC3Q13507 836 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 BFSP2Q13515 415 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 SLC12A1Q13621 1099 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 AAK1Q2M2I8 961 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 MEX3CQ5U5Q3 659 aaKnown RBP5.13□□□□□ -1.59
C11orf88-204ENST00000529661 DGAT2L7PQ6IED9 249 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 CLEC4GQ6UXB4 293 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 SYT13Q7L8C5 426 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 HTRA1Q92743 480 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 GOLGA1Q92805 767 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 MAP4K1Q92918 833 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 CUL5Q93034 780 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 SENP7Q9BQF6 1050 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 SPRTNQ9H040 489 aaPredicted RBP5.13□□□□□ -1.59
C11orf88-204ENST00000529661 UNC45AQ9H3U1 944 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 UBN1Q9NPG3 1134 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 TMLHEQ9NVH6 421 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 GAR1Q9NY12 217 aaKnown RBP5.13□□□□□ -1.59
C11orf88-204ENST00000529661 TUBA8Q9NY65 449 aaPredicted RBP5.13□□□□□ -1.59
C11orf88-204ENST00000529661 FZD4Q9ULV1 537 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 MAFFQ9ULX9 164 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 UBE2J1Q9Y385 318 aaPredicted RBP5.13□□□□□ -1.59
C11orf88-204ENST00000529661 PCDHB2Q9Y5E7 798 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 ZNF521Q96K83 1311 aa5.13□□□□□ -1.59
C11orf88-204ENST00000529661 E5RJQ4 531 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 M0QYT0 321 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 ADAM10O14672 748 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 NKX2-8O15522 239 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 CYP3A4P08684 503 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 TNFAIP3P21580 790 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 JAK3P52333 1124 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 RBM5P52756 815 aaKnown RBP eCLIP5.12□□□□□ -1.59
C11orf88-204ENST00000529661 RPL15P61313 204 aaKnown RBP5.12□□□□□ -1.59
C11orf88-204ENST00000529661 YPEL5P62699 121 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 RAE1P78406 368 aaKnown RBP5.12□□□□□ -1.59
C11orf88-204ENST00000529661 ZNF91Q05481 1191 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 MAPK7Q13164 816 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 KPNB1Q14974 876 aaKnown RBP5.12□□□□□ -1.59
C11orf88-204ENST00000529661 RABEP1Q15276 862 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 ANKRD1Q15327 319 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 DLGAP5Q15398 846 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 TRIP6Q15654 476 aaKnown RBP5.12□□□□□ -1.59
C11orf88-204ENST00000529661 PFKFB3Q16875 520 aaPredicted RBP5.12□□□□□ -1.59
C11orf88-204ENST00000529661 EPHA10Q5JZY3 1008 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 C11orf87Q6NUJ2 197 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 ACSM6Q6P461 480 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 KRT27Q7Z3Y8 459 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 TSPYL6Q8N831 410 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 CEP70Q8NHQ1 597 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 ZNF398Q8TD17 642 aa5.12□□□□□ -1.59
C11orf88-204ENST00000529661 NPIPB3Q92617 1050 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms