RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 DNA2P51530 1060 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 CDH6P55285 790 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 TPI1P60174 286 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 CDH18Q13634 790 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 MLF2Q15773 248 aaPredicted RBP12.27□□□□□ -0.45
CUX1-210ENST00000497815 ALFQ53S48 1182 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 ACBD5Q5T8D3 534 aaPredicted RBP12.27□□□□□ -0.45
CUX1-210ENST00000497815 PEX26Q7Z412 305 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 RALGPS2Q86X27 583 aaPredicted RBP12.27□□□□□ -0.45
CUX1-210ENST00000497815 MFN1Q8IWA4 741 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 CCDC117Q8IWD4 279 aaPredicted RBP12.27□□□□□ -0.45
CUX1-210ENST00000497815 SYCE1Q8N0S2 351 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 CCAR2Q8N163 923 aaKnown RBP12.27□□□□□ -0.45
CUX1-210ENST00000497815 SIX5Q8N196 739 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 C17orf53Q8N3J3 647 aaPredicted RBP12.27□□□□□ -0.45
CUX1-210ENST00000497815 KCTD6Q8NC69 237 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 TBC1D31Q96DN5 1066 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 XPO6Q96QU8 1125 aaKnown RBP12.27□□□□□ -0.45
CUX1-210ENST00000497815 CALN1Q9BXU9 219 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 IRX2Q9BZI1 471 aaPredicted RBP12.27□□□□□ -0.45
CUX1-210ENST00000497815 ZYG11BQ9C0D3 744 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 C8orf33Q9H7E9 229 aaPredicted RBP12.27□□□□□ -0.45
CUX1-210ENST00000497815 WNT16Q9UBV4 365 aa12.27□□□□□ -0.45
CUX1-210ENST00000497815 PACSIN2Q9UNF0 486 aaPredicted RBP12.27□□□□□ -0.45
CUX1-210ENST00000497815 COL4A2P08572 1712 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 A0A1B0GVM2 712 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 LRRD1A4D1F6 860 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 KRBA1A5PL33 1030 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 TCAF2A6NFQ2 919 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 DRGXA6NNA5 263 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 H0Y626 953 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 H3BRJ5 948 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 CACNG3O60359 315 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 TULP3O75386 442 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 LUC7L3O95232 432 aaKnown RBP12.26□□□□□ -0.45
CUX1-210ENST00000497815 CD48P09326 243 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 ARL4AP40617 200 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 OPRD1P41143 372 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 DGKGP49619 791 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 AMPD2Q01433 879 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 NRG1Q02297 640 aaPredicted RBP12.26□□□□□ -0.45
CUX1-210ENST00000497815 SEMA3BQ13214 749 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 PON2Q15165 354 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 DPYSL2Q16555 572 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 ODF2Q5BJF6 829 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 MPP7Q5T2T1 576 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 ARTNQ5T4W7 220 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 MANEALQ5VSG8 457 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 TTC39BQ5VTQ0 682 aaPredicted RBP12.26□□□□□ -0.45
CUX1-210ENST00000497815 GRAMD4Q6IC98 578 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 TXNDC11Q6PKC3 985 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 POLNQ7Z5Q5 900 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 NT5DC3Q86UY8 548 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 PSTKQ8IV42 348 aaKnown RBP12.26□□□□□ -0.45
CUX1-210ENST00000497815 WFDC5Q8TCV5 224 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 FAM3CQ92520 227 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 RAPGEF5Q92565 580 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 KRT35Q92764 455 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 ALS2CR12Q96Q35 445 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 P2RY13Q9BPV8 354 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 PCDH18Q9HCL0 1135 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 FBRSL1Q9HCM7 1045 aaKnown RBP12.26□□□□□ -0.45
CUX1-210ENST00000497815 CWC15Q9P013 229 aaKnown RBP12.26□□□□□ -0.45
CUX1-210ENST00000497815 DEC1Q9P2X7 70 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 AMFRQ9UKV5 643 aa12.26□□□□□ -0.45
CUX1-210ENST00000497815 IGLV3-10A0A075B6K4 115 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.25□□□□□ -0.45
CUX1-210ENST00000497815 STK25O00506 426 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 PSTPIP1O43586 416 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 CLDN11O75508 207 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 GALK1P51570 392 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 CDH4P55283 916 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 MESP2Q0VG99 397 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 MMRN1Q13201 1228 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 ZNF177Q13360 481 aaPredicted RBP12.25□□□□□ -0.45
CUX1-210ENST00000497815 DPYSL3Q14195 570 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 C5orf22Q49AR2 442 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 FSCBQ5H9T9 825 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 LRRC38Q5VT99 294 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 ASTLQ6HA08 431 aaPredicted RBP12.25□□□□□ -0.45
CUX1-210ENST00000497815 RFX8Q6ZV50 586 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 CHST9Q7L1S5 443 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 ETFBKMTQ8IXQ9 262 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 EDAQ92838 391 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 CD101Q93033 1021 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 RNF25Q96BH1 459 aaPredicted RBP12.25□□□□□ -0.45
CUX1-210ENST00000497815 PNKPQ96T60 521 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 ARHGEF4Q9NR80 690 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 ABCB8Q9NUT2 735 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 DDX56Q9NY93 547 aaKnown RBP12.25□□□□□ -0.45
CUX1-210ENST00000497815 PPARGC1AQ9UBK2 798 aaKnown RBP12.25□□□□□ -0.45
CUX1-210ENST00000497815 DNAI1Q9UI46 699 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 NDRG2Q9UN36 371 aaKnown RBP12.25□□□□□ -0.45
CUX1-210ENST00000497815 NEU3Q9UQ49 428 aa12.25□□□□□ -0.45
CUX1-210ENST00000497815 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.25□□□□□ -0.45
CUX1-210ENST00000497815 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.24□□□□□ -0.45
CUX1-210ENST00000497815 MAN2B1O00754 1011 aa12.24□□□□□ -0.45
CUX1-210ENST00000497815 ALADP13716 330 aa12.24□□□□□ -0.45
CUX1-210ENST00000497815 GLULP15104 373 aa12.24□□□□□ -0.45
CUX1-210ENST00000497815 RHOQP17081 205 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms