RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 BMP6P22004 513 aa22.9■■□□□ 1.26
HDDC3-203ENST00000494993 CSKP41240 450 aa22.9■■□□□ 1.26
HDDC3-203ENST00000494993 GPD2P43304 727 aa22.9■■□□□ 1.26
HDDC3-203ENST00000494993 GRIA4P48058 902 aa22.9■■□□□ 1.26
HDDC3-203ENST00000494993 ST8SIA6P61647 398 aa22.9■■□□□ 1.26
HDDC3-203ENST00000494993 RPS24P62847 133 aaKnown RBP22.9■■□□□ 1.26
HDDC3-203ENST00000494993 NUCB2P80303 420 aa22.9■■□□□ 1.26
HDDC3-203ENST00000494993 KCNH2Q12809 1159 aa22.9■■□□□ 1.26
HDDC3-203ENST00000494993 FAM149B1Q96BN6 582 aa22.9■■□□□ 1.26
HDDC3-203ENST00000494993 SLC39A13Q96H72 371 aa22.9■■□□□ 1.26
HDDC3-203ENST00000494993 KREMEN1Q96MU8 473 aa22.9■■□□□ 1.26
HDDC3-203ENST00000494993 NUCKS1Q9H1E3 243 aaKnown RBP22.9■■□□□ 1.26
HDDC3-203ENST00000494993 KIAA1522Q9P206 1035 aaPredicted RBP22.9■■□□□ 1.26
HDDC3-203ENST00000494993 NAALADL1Q9UQQ1 740 aa22.9■■□□□ 1.26
HDDC3-203ENST00000494993 ANKRD6Q9Y2G4 727 aa22.9■■□□□ 1.26
HDDC3-203ENST00000494993 ADAMTS20P59510 1910 aa22.9■■□□□ 1.26
HDDC3-203ENST00000494993 ACACAQ13085 2346 aa22.9■■□□□ 1.26
HDDC3-203ENST00000494993 BICDL2A1A5D9 508 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 PPP1R3GB7ZBB8 358 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 TAF4O00268 1085 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 SART1O43290 800 aaKnown RBP22.89■■□□□ 1.25
HDDC3-203ENST00000494993 CD27P26842 260 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 SCAPQ12770 1279 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 MS4A13Q5J8X5 152 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 CCNI2Q6ZMN8 369 aaPredicted RBP22.89■■□□□ 1.25
HDDC3-203ENST00000494993 USP30Q70CQ3 517 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 TAC4Q86UU9 113 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 PROSER1Q86XN7 944 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 TRIM59Q8IWR1 403 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 SCUBE3Q8IX30 993 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 CARNMT1Q8N4J0 409 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 ADAM32Q8TC27 787 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 MRGPRX3Q96LB0 322 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 CDC6Q99741 560 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 PABPC3Q9H361 631 aaKnown RBP22.89■■□□□ 1.25
HDDC3-203ENST00000494993 ST7Q9NRC1 585 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 SCML1Q9UN30 329 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 CNTN6Q9UQ52 1028 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 CTNND2Q9UQB3 1225 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 NCKAP1Q9Y2A7 1128 aa22.89■■□□□ 1.25
HDDC3-203ENST00000494993 SIN3BO75182 1162 aa22.88■■□□□ 1.25
HDDC3-203ENST00000494993 MOCS2O96007 188 aaPredicted RBP22.88■■□□□ 1.25
HDDC3-203ENST00000494993 ACADSBP45954 432 aa22.88■■□□□ 1.25
HDDC3-203ENST00000494993 CDH18Q13634 790 aa22.88■■□□□ 1.25
HDDC3-203ENST00000494993 SUZ12Q15022 739 aaKnown RBP22.88■■□□□ 1.25
HDDC3-203ENST00000494993 HNRNPA1L2Q32P51 320 aaKnown RBP22.88■■□□□ 1.25
HDDC3-203ENST00000494993 FSCBQ5H9T9 825 aa22.88■■□□□ 1.25
HDDC3-203ENST00000494993 BEND5Q7L4P6 421 aa22.88■■□□□ 1.25
HDDC3-203ENST00000494993 CCDC117Q8IWD4 279 aaPredicted RBP22.88■■□□□ 1.25
HDDC3-203ENST00000494993 KDM1BQ8NB78 822 aa22.88■■□□□ 1.25
HDDC3-203ENST00000494993 RHBDD1Q8TEB9 315 aa22.88■■□□□ 1.25
HDDC3-203ENST00000494993 ORAI3Q9BRQ5 295 aa22.88■■□□□ 1.25
HDDC3-203ENST00000494993 TOR4AQ9NXH8 423 aa22.88■■□□□ 1.25
HDDC3-203ENST00000494993 BTBD3Q9Y2F9 522 aa22.88■■□□□ 1.25
HDDC3-203ENST00000494993 RNASEH1O60930 286 aaKnown RBP22.87■■□□□ 1.25
HDDC3-203ENST00000494993 LUC7L3O95232 432 aaKnown RBP22.87■■□□□ 1.25
HDDC3-203ENST00000494993 GNA14O95837 355 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 MARSP56192 900 aaKnown RBP22.87■■□□□ 1.25
HDDC3-203ENST00000494993 MORC3Q14149 939 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 ARID5BQ14865 1188 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 MEA1Q16626 185 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 DCAF6Q58WW2 860 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 PITRM1Q5JRX3 1037 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 SYPL2Q5VXT5 272 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 KIAA0895LQ68EN5 471 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 DENND1BQ6P3S1 775 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 LAYNQ6UX15 382 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 MMS22LQ6ZRQ5 1243 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 DHX40Q8IX18 779 aaKnown RBP22.87■■□□□ 1.25
HDDC3-203ENST00000494993 CFAP52Q8N1V2 620 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 GANCQ8TET4 914 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 IGSF8Q969P0 613 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 TRIM62Q9BVG3 475 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 SLC4A5Q9BY07 1137 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 INTS2Q9H0H0 1204 aaKnown RBP22.87■■□□□ 1.25
HDDC3-203ENST00000494993 FBXL12Q9NXK8 326 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 ERVW-1Q9UQF0 538 aa22.87■■□□□ 1.25
HDDC3-203ENST00000494993 CAPN9O14815 690 aa22.86■■□□□ 1.25
HDDC3-203ENST00000494993 APOEP02649 317 aa22.86■■□□□ 1.25
HDDC3-203ENST00000494993 AFPP02771 609 aaKnown RBP22.86■■□□□ 1.25
HDDC3-203ENST00000494993 IGHV4-34P06331 123 aa22.86■■□□□ 1.25
HDDC3-203ENST00000494993 SRPRAP08240 638 aaKnown RBP22.86■■□□□ 1.25
HDDC3-203ENST00000494993 ATXN1LP0C7T5 689 aaKnown RBP22.86■■□□□ 1.25
HDDC3-203ENST00000494993 KRT5P13647 590 aa22.86■■□□□ 1.25
HDDC3-203ENST00000494993 STX17P56962 302 aa22.86■■□□□ 1.25
HDDC3-203ENST00000494993 STK32AQ8WU08 396 aa22.86■■□□□ 1.25
HDDC3-203ENST00000494993 SERGEFQ9UGK8 458 aa22.86■■□□□ 1.25
HDDC3-203ENST00000494993 XPO7Q9UIA9 1087 aaKnown RBP22.86■■□□□ 1.25
HDDC3-203ENST00000494993 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.86■■□□□ 1.25
HDDC3-203ENST00000494993 ITIH6Q6UXX5 1313 aa22.85■■□□□ 1.25
HDDC3-203ENST00000494993 DOCK9Q9BZ29 2069 aa22.85■■□□□ 1.25
HDDC3-203ENST00000494993 MID1O15344 667 aa22.85■■□□□ 1.25
HDDC3-203ENST00000494993 PAPSS1O43252 624 aaPredicted RBP22.85■■□□□ 1.25
HDDC3-203ENST00000494993 DKK1O94907 266 aa22.85■■□□□ 1.25
HDDC3-203ENST00000494993 MOCS3O95396 460 aa22.85■■□□□ 1.25
HDDC3-203ENST00000494993 CTSOP43234 321 aaPredicted RBP22.85■■□□□ 1.25
HDDC3-203ENST00000494993 CTSKP43235 329 aa22.85■■□□□ 1.25
HDDC3-203ENST00000494993 CCT8P50990 548 aa22.85■■□□□ 1.25
HDDC3-203ENST00000494993 SFSWAPQ12872 951 aaKnown RBP22.85■■□□□ 1.25
HDDC3-203ENST00000494993 BECN1Q14457 450 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms