RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 DSEQ9UL01 958 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MGAT4AQ9UM21 535 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TAF6LQ9Y6J9 622 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 H3BMM5 538 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 OGTO15294 1046 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RCVRNP35243 200 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 COILP38432 576 aaPredicted RBP13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 COPZ1P61923 177 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TCHHL1Q5QJ38 904 aaPredicted RBP13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 C16orf86Q6ZW13 317 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SCUBE3Q8IX30 993 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 LINC00116Q8NCU8 138 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 VPS33AQ96AX1 596 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 C7orf25Q9BPX7 421 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ERP44Q9BS26 406 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 VIPAS39Q9H9C1 493 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 LIMD1Q9UGP4 676 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PKN1Q16512 942 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PMF1Q6P1K2 205 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RASGRP2Q7LDG7 609 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 LGI2Q8N0V4 545 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MPP4Q96JB8 637 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FZD1Q9UP38 647 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MRPS7Q9Y2R9 242 aaKnown RBP13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MPP3Q13368 585 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 DNAAF5Q86Y56 855 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 EPS8L3Q8TE67 593 aaKnown RBP13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CCSER1Q9C0I3 900 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 AGPAT3Q9NRZ7 376 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 NPC1L1Q9UHC9 1359 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FOXN3O00409 490 aaPredicted RBP13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TIMM44O43615 452 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 USP17L7P0C7H9 530 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RUSC1Q9BVN2 902 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 BHLHE41Q9C0J9 482 aaPredicted RBP13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 NEK6Q9HC98 313 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MYH8P13535 1937 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ADGRL2O95490 1459 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 NFKB1P19838 968 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 BDNFP23560 247 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 DSG1Q02413 1049 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CHPFQ8IZ52 775 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TRPV3Q8NET8 790 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RXFP2Q8WXD0 754 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CRAMP1Q96RY5 1269 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 BPIFA3Q9BQP9 254 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CORO1BQ9BR76 489 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 LRRC40Q9H9A6 602 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ZNF232Q9UNY5 417 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RBAK-RBAKDNI3L0D1 243 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TRDMT1O14717 391 aaKnown RBP13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 XYLBO75191 536 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 DDNO94850 711 aaPredicted RBP13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ADSLP30566 484 aaPredicted RBP13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MILR1Q7Z6M3 343 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 HPS6Q86YV9 775 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RNF148Q8N7C7 305 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 DHRS1Q96LJ7 313 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 KCNN2Q9H2S1 579 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CCDC167Q9P0B6 97 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 AMHP03971 560 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CEBPGP53567 150 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 APBA2Q99767 749 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 OR10H1Q9Y4A9 318 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 NR2E3Q9Y5X4 410 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CFAP74Q9C0B2 1584 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SRGNP10124 158 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FMO4P31512 558 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 BCL2L1Q07817 233 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TAF2Q6P1X5 1199 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TMC5Q6UXY8 1006 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PACS2Q86VP3 889 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 HOMEZQ8IX15 550 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ADARB2Q9NS39 739 aaKnown RBP13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SUCOQ9UBS9 1254 aaKnown RBP13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SNCAIPQ9Y6H5 919 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CCDC154A6NI56 674 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FOXP2O15409 715 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SLC39A12Q504Y0 691 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PGBD2Q6P3X8 592 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MPZL3Q6UWV2 235 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SUGP1Q8IWZ8 645 aaKnown RBP13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PRMT6Q96LA8 375 aaPredicted RBP13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 XPNPEP3Q9NQH7 507 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 COMMD8Q9NX08 183 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ANKDD1BA6NHY2 528 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 H0Y858 1186 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PDHXO00330 501 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 NDUFV1P49821 464 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MYL6P60660 151 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 NBPF12Q5TAG4 269 aaPredicted RBP13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 C16orf46Q6P387 395 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TMEM26Q6ZUK4 368 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CBWD1Q9BRT8 395 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 GSAPA4D1B5 854 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 KMOO15229 486 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TPBGLP0DKB5 382 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ATP5F1P24539 256 aaPredicted RBP13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 NT5C2P49902 561 aa13.49□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 NUP107P57740 925 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms