RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 PCIF1Q9H4Z3 704 aa5.57□□□□□ -1.52
PTPN4-209ENST00000469511 NMUR1Q9HB89 426 aa5.57□□□□□ -1.52
PTPN4-209ENST00000469511 NPHS2Q9NP85 383 aa5.57□□□□□ -1.52
PTPN4-209ENST00000469511 TBC1D7Q9P0N9 293 aa5.57□□□□□ -1.52
PTPN4-209ENST00000469511 LARSQ9P2J5 1176 aaKnown RBP5.57□□□□□ -1.52
PTPN4-209ENST00000469511 CDH9Q9ULB4 789 aa5.57□□□□□ -1.52
PTPN4-209ENST00000469511 PCDHGA1Q9Y5H4 931 aa5.57□□□□□ -1.52
PTPN4-209ENST00000469511 SPTBN1Q01082 2364 aaKnown RBP5.56□□□□□ -1.52
PTPN4-209ENST00000469511 GFRA2O00451 464 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 KLK10O43240 276 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 REC8O95072 547 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 RECKO95980 971 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 MT-CO3P00414 261 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 EPHX1P07099 455 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 PTPN1P18031 435 aaKnown RBP5.56□□□□□ -1.52
PTPN4-209ENST00000469511 GLDCP23378 1020 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 WARSP23381 471 aaKnown RBP5.56□□□□□ -1.52
PTPN4-209ENST00000469511 HNF1BP35680 557 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 GNL1P36915 607 aaPredicted RBP5.56□□□□□ -1.52
PTPN4-209ENST00000469511 PNPLA4P41247 253 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 MAP2K3P46734 347 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 GRIA4P48058 902 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 PDE6CP51160 858 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 CASP5P51878 434 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 GPLD1P80108 840 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 RBP5P82980 135 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 HYAL2Q12891 473 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 SRSF6Q13247 344 aaKnown RBP5.56□□□□□ -1.52
PTPN4-209ENST00000469511 KCNJ12Q14500 433 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 FYB2Q5VWT5 728 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 ZNF787Q6DD87 383 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 DTHD1Q6ZMT9 781 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 ZNF720Q7Z2F6 126 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 GPRIN1Q7Z2K8 1008 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 DDX42Q86XP3 938 aaKnown RBP eCLIP5.56□□□□□ -1.52
PTPN4-209ENST00000469511 ZC3H3Q8IXZ2 948 aaKnown RBP5.56□□□□□ -1.52
PTPN4-209ENST00000469511 LRRC52Q8N7C0 313 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 DCBLD1Q8N8Z6 715 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 NOC3LQ8WTT2 800 aaKnown RBP5.56□□□□□ -1.52
PTPN4-209ENST00000469511 CYB5D2Q8WUJ1 264 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 PRCCQ92733 491 aaPredicted RBP5.56□□□□□ -1.52
PTPN4-209ENST00000469511 HPDLQ96IR7 371 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 PIWIL1Q96J94 861 aaKnown RBP5.56□□□□□ -1.52
PTPN4-209ENST00000469511 C8orf76Q96K31 380 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 SLITRK1Q96PX8 696 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 XPO6Q96QU8 1125 aaKnown RBP5.56□□□□□ -1.52
PTPN4-209ENST00000469511 MDFIQ99750 246 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 CBWD1Q9BRT8 395 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 STRA6Q9BX79 667 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 FOXP1Q9H334 677 aaPredicted RBP5.56□□□□□ -1.52
PTPN4-209ENST00000469511 IL37Q9NZH6 218 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 ANKMY1Q9P2S6 941 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 SERGEFQ9UGK8 458 aa5.56□□□□□ -1.52
PTPN4-209ENST00000469511 SCN8AQ9UQD0 1980 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 A0A1W2PR77 199 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 VWA3AA6NCI4 1184 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 FAM47DPA6NHR8 397 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 TRIM38O00635 465 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 TLR5O60602 858 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 SDC3O75056 442 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 IL18RAPO95256 599 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 SEMA4FO95754 770 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 ITGAVP06756 1048 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 ITGB6P18564 788 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 CD27P26842 260 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 OXTRP30559 389 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 ACTN2P35609 894 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 DDIT3P35638 169 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 PPP3CCP48454 512 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 SLC5A3P53794 718 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 CDH8P55286 799 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 TMPRSS3P57727 454 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 RPS14P62263 151 aaKnown RBP5.55□□□□□ -1.52
PTPN4-209ENST00000469511 ORC2Q13416 577 aaPredicted RBP5.55□□□□□ -1.52
PTPN4-209ENST00000469511 STARD3Q14849 445 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 SNX30Q5VWJ9 437 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 SLFN12LQ6IEE8 588 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 DPH6Q7L8W6 267 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 DYMQ7RTS9 669 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 SFR1Q86XK3 245 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 SPATS2Q86XZ4 545 aaKnown RBP5.55□□□□□ -1.52
PTPN4-209ENST00000469511 CCDC83Q8IWF9 413 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 DHX40Q8IX18 779 aaKnown RBP5.55□□□□□ -1.52
PTPN4-209ENST00000469511 ZNF248Q8NDW4 579 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 FBXO18Q8NFZ0 1043 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 OR6B3Q8NGW1 331 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 MMS19Q96T76 1030 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 ELF4Q99607 663 aaPredicted RBP5.55□□□□□ -1.52
PTPN4-209ENST00000469511 SMOQ99835 787 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 SDCBP2Q9H190 292 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 LHX5Q9H2C1 402 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 SUV39H2Q9H5I1 410 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 C12orf49Q9H741 205 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 PARVGQ9HBI0 331 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 OSGEPQ9NPF4 335 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 ASCL3Q9NQ33 180 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 INTS13Q9NVM9 706 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 ELOVL2Q9NXB9 296 aa5.55□□□□□ -1.52
PTPN4-209ENST00000469511 RBAKQ9NYW8 714 aaPredicted RBP5.55□□□□□ -1.52
PTPN4-209ENST00000469511 HSPBP1Q9NZL4 362 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms