RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 OR52K1Q8NGK4 314 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 TTC8Q8TAM2 541 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 AZIN2Q96A70 460 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 CADM1Q9BY67 442 aaKnown RBP13.75□□□□□ -0.21
CCDC3-202ENST00000378839 NMUR2Q9GZQ4 415 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 XPNPEP3Q9NQH7 507 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 MARCOQ9UEW3 520 aaPredicted RBP13.75□□□□□ -0.21
CCDC3-202ENST00000378839 TPP1O14773 563 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 ITM2AO43736 263 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 TOMM70O94826 608 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 C6orf222P0C671 652 aaPredicted RBP13.74□□□□□ -0.21
CCDC3-202ENST00000378839 KITP10721 976 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 NCAM1P13591 858 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 SLC8A1P32418 973 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 FDFT1P37268 417 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 TAF1CQ15572 869 aaPredicted RBP13.74□□□□□ -0.21
CCDC3-202ENST00000378839 ARTNQ5T4W7 220 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 TIFABQ6ZNK6 161 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 MARK2Q7KZI7 788 aaKnown RBP13.74□□□□□ -0.21
CCDC3-202ENST00000378839 STKLD1Q8NE28 680 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 ZSCAN18Q8TBC5 510 aaPredicted RBP13.74□□□□□ -0.21
CCDC3-202ENST00000378839 PGBD4Q96DM1 585 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 TSPAN18Q96SJ8 248 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 TLE6Q9H808 572 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 LNPEPQ9UIQ6 1025 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 FBXW11Q9UKB1 542 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 ZBTB24O43167 697 aaPredicted RBP13.74□□□□□ -0.21
CCDC3-202ENST00000378839 OPHN1O60890 802 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 DNAJC6O75061 913 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 PEX11AO75192 247 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 SNNO75324 88 aaPredicted RBP13.74□□□□□ -0.21
CCDC3-202ENST00000378839 KRT38O76015 456 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 BPGMP07738 259 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 NEFHP12036 1026 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 MLNP12872 115 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 ELF1P32519 619 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 CYS1Q717R9 158 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 RASAL3Q86YV0 1011 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 E2F7Q96AV8 911 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 ZNF419Q96HQ0 510 aaPredicted RBP13.74□□□□□ -0.21
CCDC3-202ENST00000378839 MLPHQ9BV36 600 aaPredicted RBP13.74□□□□□ -0.21
CCDC3-202ENST00000378839 SENP6Q9GZR1 1112 aaPredicted RBP13.74□□□□□ -0.21
CCDC3-202ENST00000378839 DENND2DQ9H6A0 471 aaPredicted RBP13.74□□□□□ -0.21
CCDC3-202ENST00000378839 ZNF358Q9NW07 568 aa13.74□□□□□ -0.21
CCDC3-202ENST00000378839 LYPLA1O75608 230 aaPredicted RBP13.73□□□□□ -0.21
CCDC3-202ENST00000378839 ATP5HO75947 161 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 HUNKP57058 714 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 UPP1Q16831 310 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 SPDYAQ5MJ70 313 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 LRRTM3Q86VH5 581 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 TREML1Q86YW5 311 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 HASPINQ8TF76 798 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 DPF3Q92784 378 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 EIF2B3Q9NR50 452 aaKnown RBP13.73□□□□□ -0.21
CCDC3-202ENST00000378839 MAGED2Q9UNF1 606 aaPredicted RBP13.73□□□□□ -0.21
CCDC3-202ENST00000378839 ENTPD5O75356 428 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 THP07101 528 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 TMPRSS15P98073 1019 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 TRIM32Q13049 653 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 PDK1Q15118 436 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 PID1Q7Z2X4 250 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 ARID3BQ8IVW6 561 aaPredicted RBP13.73□□□□□ -0.21
CCDC3-202ENST00000378839 ACVR1CQ8NER5 493 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 MTBPQ96DY7 904 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 IQCGQ9H095 443 aaKnown RBP13.73□□□□□ -0.21
CCDC3-202ENST00000378839 DDIT4Q9NX09 232 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 STAP1Q9ULZ2 295 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 Q9Y3F1 56 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 FCHO1O14526 889 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 ITGB1P05556 798 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 PTPN4P29074 926 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 ABCG1P45844 678 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 BRCC3P46736 316 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 PGGT1BP53609 377 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 MGAT3Q09327 533 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 SCAPQ12770 1279 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 BIRC2Q13490 618 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 IRF5Q13568 498 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 NUDCD3Q8IVD9 361 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 C7orf26Q96N11 449 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 AGAP2Q99490 1192 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 EBF4Q9BQW3 602 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 COLEC11Q9BWP8 271 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 ARHGAP39Q9C0H5 1083 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 SAR1AQ9NR31 198 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 IGSF9Q9P2J2 1179 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 NEU3Q9UQ49 428 aa13.73□□□□□ -0.21
CCDC3-202ENST00000378839 MTO1Q9Y2Z2 717 aaKnown RBP13.73□□□□□ -0.21
CCDC3-202ENST00000378839 SF3B1O75533 1304 aaKnown RBP eCLIP13.73□□□□□ -0.21
CCDC3-202ENST00000378839 COL4A4P53420 1690 aaPredicted RBP13.72□□□□□ -0.21
CCDC3-202ENST00000378839 C9IYK1 514 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 PGAM1P18669 254 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 SLC8A3P57103 927 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 GJA9P57773 515 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 CAP1Q01518 475 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 GNASQ5JWF2 1037 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 KCTD11Q693B1 232 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 DSTYKQ6XUX3 929 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 ARHGAP36Q6ZRI8 547 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 APOL2Q9BQE5 337 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms