RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 SUPT7LO94864 414 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 CTCFP49711 727 aaPredicted RBP12.31□□□□□ -0.44
PCF11-201ENST00000298281 BCAT1P54687 386 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 CLCA4Q14CN2 919 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 MCCC2Q9HCC0 563 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 WHRNQ9P202 907 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 CCL15-CCL14A0A0B4J2E2 113 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 M0QYT0 321 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 FOXN1O15353 648 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 PRKAR2AP13861 404 aaKnown RBP12.31□□□□□ -0.44
PCF11-201ENST00000298281 PSMB9P28065 219 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 THOP1P52888 689 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 FCGRTP55899 365 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 MEA1Q16626 185 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 CCL15Q16663 113 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 COLEC12Q5KU26 742 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 MOXD1Q6UVY6 613 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 ATAD3AQ9NVI7 634 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 ADGRA3Q8IWK6 1321 aa12.31□□□□□ -0.44
PCF11-201ENST00000298281 SH3D21A4FU49 640 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 URODP06132 367 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 MYBL2P10244 700 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 EIF4BP23588 611 aaKnown RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 PTPN3P26045 913 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 PPM1AP35813 382 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 NAMPTP43490 491 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 POU5F1Q01860 360 aaKnown RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 SMTNL2Q2TAL5 461 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 FBXO32Q969P5 355 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 PHF20L1A8MW92 1017 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 PEX14O75381 377 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 NPTXRO95502 500 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 HOXC6P09630 235 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 RXRGP48443 463 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 RAD23AP54725 363 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 SPIDRQ14159 915 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 MPP2Q14168 576 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 USP41Q3LFD5 358 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 PACS2Q86VP3 889 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 CBWD2Q8IUF1 395 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 ARID3BQ8IVW6 561 aaPredicted RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 MTFMTQ96DP5 389 aaKnown RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 KCNH7Q9NS40 1196 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 MBD5Q9P267 1494 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 USP27XA6NNY8 438 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 CSF1RP07333 972 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 STAT5AP42229 794 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 NFE2Q16621 373 aaPredicted RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 TMEM26Q6ZUK4 368 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 SLC22A9Q8IVM8 553 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 EID3Q8N140 333 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 PABPC3Q9H361 631 aaKnown RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 CMTM6Q9NX76 183 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 A0A088AWK7 358 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 DCDC2CA8MYV0 355 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 ITGB3P05106 788 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 ZNF10P21506 573 aaPredicted RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 ELAVL2Q12926 359 aaKnown RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 RAPSNQ13702 412 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 PTPAQ15257 358 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 ZNHIT3Q15649 155 aaPredicted RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 MAGEE2Q8TD90 523 aaPredicted RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 TARS2Q9BW92 718 aaKnown RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 KATNA1O75449 491 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 PSIP1O75475 530 aaKnown RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 DBIP07108 87 aaKnown RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 OXCT1P55809 520 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 OTUD4Q01804 1114 aaKnown RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 MAPK7Q13164 816 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 SWI5Q1ZZU3 235 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 HSDL1Q3SXM5 330 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 STYK1Q6J9G0 422 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 B3GAT3O94766 335 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 LHX1P48742 406 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 EIF2B2P49770 351 aaKnown RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 ATN1P54259 1190 aaPredicted RBP12.3□□□□□ -0.44
PCF11-201ENST00000298281 MCL1Q07820 350 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 FAPQ12884 760 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 SLC29A2Q14542 456 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 CDC42EP5Q6NZY7 148 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 NCKIPSDQ9NZQ3 722 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 CLEC4AQ9UMR7 237 aa12.3□□□□□ -0.44
PCF11-201ENST00000298281 MAGEB16A2A368 324 aa12.29□□□□□ -0.44
PCF11-201ENST00000298281 FXR1P51114 621 aaKnown RBP eCLIP12.29□□□□□ -0.44
PCF11-201ENST00000298281 PARGQ86W56 976 aa12.29□□□□□ -0.44
PCF11-201ENST00000298281 SH2D3CQ8N5H7 860 aa12.29□□□□□ -0.44
PCF11-201ENST00000298281 THRSPQ92748 146 aa12.29□□□□□ -0.44
PCF11-201ENST00000298281 COMMD8Q9NX08 183 aa12.29□□□□□ -0.44
PCF11-201ENST00000298281 RRN3Q9NYV6 651 aa12.29□□□□□ -0.44
PCF11-201ENST00000298281 MRPS7Q9Y2R9 242 aaKnown RBP12.29□□□□□ -0.44
PCF11-201ENST00000298281 PREX2Q70Z35 1606 aa12.29□□□□□ -0.44
PCF11-201ENST00000298281 DCLK1O15075 740 aa12.29□□□□□ -0.44
PCF11-201ENST00000298281 GZMAP12544 262 aa12.29□□□□□ -0.44
PCF11-201ENST00000298281 RPL4P36578 427 aaKnown RBP12.29□□□□□ -0.44
PCF11-201ENST00000298281 PLD1Q13393 1074 aa12.29□□□□□ -0.44
PCF11-201ENST00000298281 SEL1L3Q68CR1 1132 aa12.29□□□□□ -0.44
PCF11-201ENST00000298281 GTF2IRD2BQ6EKJ0 949 aa12.29□□□□□ -0.44
PCF11-201ENST00000298281 GTF2IRD2Q86UP8 949 aa12.29□□□□□ -0.44
PCF11-201ENST00000298281 AGBL3Q8NEM8 1001 aa12.29□□□□□ -0.44
PCF11-201ENST00000298281 UBA3Q8TBC4 463 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms