RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 SMTNL2Q2TAL5 461 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 TPGS1Q6ZTW0 290 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 TMEM25Q86YD3 366 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 REXO1L1PQ8IX06 675 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 TMA16Q96EY4 203 aaKnown RBP17.65■□□□□ 0.42
NUP88-210ENST00000574867 MSANTD3Q96H12 275 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 RPRD1AQ96P16 312 aaPredicted RBP17.65■□□□□ 0.42
NUP88-210ENST00000574867 EPAS1Q99814 870 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 BBS2Q9BXC9 721 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 GOLPH3Q9H4A6 298 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 CD320Q9NPF0 282 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 VANGL2Q9ULK5 521 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 E9PAM4 449 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 PALMO75781 387 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 PENKP01210 267 aaPredicted RBP17.65■□□□□ 0.42
NUP88-210ENST00000574867 RARAP10276 462 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 GGCXP38435 758 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 AMPD2Q01433 879 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 ANO4Q32M45 955 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 C5orf22Q49AR2 442 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 MANEALQ5VSG8 457 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 FYB2Q5VWT5 728 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 FBXL22Q6P050 247 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 DDI1Q8WTU0 396 aa17.65■□□□□ 0.42
NUP88-210ENST00000574867 DHX35Q9H5Z1 703 aaKnown RBP17.65■□□□□ 0.42
NUP88-210ENST00000574867 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.65■□□□□ 0.42
NUP88-210ENST00000574867 PPARGC1AQ9UBK2 798 aaKnown RBP17.65■□□□□ 0.42
NUP88-210ENST00000574867 IGLV3-10A0A075B6K4 115 aa17.64■□□□□ 0.41
NUP88-210ENST00000574867 NEDD8-MDP1E9PL57 170 aa17.64■□□□□ 0.41
NUP88-210ENST00000574867 TSPAN3O60637 253 aa17.64■□□□□ 0.41
NUP88-210ENST00000574867 GLULP15104 373 aa17.64■□□□□ 0.41
NUP88-210ENST00000574867 SEMA3BQ13214 749 aa17.64■□□□□ 0.41
NUP88-210ENST00000574867 KCNT1Q5JUK3 1230 aa17.64■□□□□ 0.41
NUP88-210ENST00000574867 ZNF683Q8IZ20 524 aa17.64■□□□□ 0.41
NUP88-210ENST00000574867 CCAR2Q8N163 923 aaKnown RBP17.64■□□□□ 0.41
NUP88-210ENST00000574867 ZNF557Q8N988 423 aaPredicted RBP17.64■□□□□ 0.41
NUP88-210ENST00000574867 TRIM58Q8NG06 486 aa17.64■□□□□ 0.41
NUP88-210ENST00000574867 HSPH1Q92598 858 aa17.64■□□□□ 0.41
NUP88-210ENST00000574867 C8orf33Q9H7E9 229 aaPredicted RBP17.64■□□□□ 0.41
NUP88-210ENST00000574867 GPATCH2LQ9NWQ4 482 aa17.64■□□□□ 0.41
NUP88-210ENST00000574867 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.64■□□□□ 0.41
NUP88-210ENST00000574867 HYOU1Q9Y4L1 999 aa17.64■□□□□ 0.41
NUP88-210ENST00000574867 OTOL1A6NHN0 477 aaPredicted RBP17.63■□□□□ 0.41
NUP88-210ENST00000574867 TRDMT1O14717 391 aaKnown RBP17.63■□□□□ 0.41
NUP88-210ENST00000574867 TYRP14679 529 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 GJC1P36383 396 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 RNF43Q68DV7 783 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 TXNRD3NBQ6F5E7 133 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 C1orf228Q6PIY5 440 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 TBC1D31Q96DN5 1066 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 XPO6Q96QU8 1125 aaKnown RBP17.63■□□□□ 0.41
NUP88-210ENST00000574867 RETREG1Q9H6L5 497 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 KCND1Q9NSA2 647 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 DDX56Q9NY93 547 aaKnown RBP17.63■□□□□ 0.41
NUP88-210ENST00000574867 MUTYHQ9UIF7 546 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 SNX10Q9Y5X0 201 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 KIAA1549LQ6ZVL6 1849 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 A0A1B0GVM2 712 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 TCAF2A6NFQ2 919 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 CACNG3O60359 315 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 LRIG2O94898 1065 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 HOXD9P28356 352 aaPredicted RBP17.63■□□□□ 0.41
NUP88-210ENST00000574867 EIF2DP41214 584 aaKnown RBP17.63■□□□□ 0.41
NUP88-210ENST00000574867 CA9Q16790 459 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 PEX26Q7Z412 305 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 C14orf80Q86SX3 495 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 PYROXD2Q8N2H3 581 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 CD101Q93033 1021 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 ZYG11BQ9C0D3 744 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 TRMT1Q9NXH9 659 aaKnown RBP17.63■□□□□ 0.41
NUP88-210ENST00000574867 AMFRQ9UKV5 643 aa17.63■□□□□ 0.41
NUP88-210ENST00000574867 DRGXA6NNA5 263 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 MIF4GDA9UHW6 222 aaKnown RBP17.62■□□□□ 0.41
NUP88-210ENST00000574867 TBL1XO60907 577 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 SRGAP2O75044 1071 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 HOXC13P31276 330 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 GJA4P35212 333 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 CTNNA1P35221 906 aaKnown RBP17.62■□□□□ 0.41
NUP88-210ENST00000574867 SGSHP51688 502 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 RPS24P62847 133 aaKnown RBP17.62■□□□□ 0.41
NUP88-210ENST00000574867 KRT81Q14533 505 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 PDK2Q15119 407 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 PPP6R3Q5H9R7 873 aaPredicted RBP17.62■□□□□ 0.41
NUP88-210ENST00000574867 ZFYVE27Q5T4F4 411 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 CHST9Q7L1S5 443 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 NT5DC3Q86UY8 548 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 RALGPS2Q86X27 583 aaPredicted RBP17.62■□□□□ 0.41
NUP88-210ENST00000574867 FAM71BQ8TC56 605 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 IGSF8Q969P0 613 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 EXOC4Q96A65 974 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 MYEOVQ96EZ4 313 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 KCTD15Q96SI1 283 aaPredicted RBP17.62■□□□□ 0.41
NUP88-210ENST00000574867 HEBP1Q9NRV9 189 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 RCOR3Q9P2K3 495 aaPredicted RBP17.62■□□□□ 0.41
NUP88-210ENST00000574867 WNT16Q9UBV4 365 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 PIAS3Q9Y6X2 628 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 CCDC66A2RUB6 948 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 FAM72CH0Y354 149 aa17.62■□□□□ 0.41
NUP88-210ENST00000574867 EEF2KO00418 725 aaKnown RBP17.62■□□□□ 0.41
NUP88-210ENST00000574867 FGF10O15520 208 aaPredicted RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms