RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 LMO2P25791 158 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 CCR1P32246 355 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 CA9Q16790 459 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 UBAP2Q5T6F2 1119 aaKnown RBP16.06■□□□□ 0.16
CUX1-211ENST00000546411 CATSPER2Q96P56 530 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 XPNPEP3Q9NQH7 507 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 THAP1Q9NVV9 213 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 FAF1Q9UNN5 650 aaPredicted RBP16.06■□□□□ 0.16
CUX1-211ENST00000546411 C15orf41Q9Y2V0 281 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 SMIM28A0A1B0GU29 152 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 TREHO43280 583 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 FOXN2P32314 431 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 SEL1L3Q68CR1 1132 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 LCLAT1Q6UWP7 414 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 VSTM1Q6UX27 236 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 CRELD2Q6UXH1 353 aaPredicted RBP16.06■□□□□ 0.16
CUX1-211ENST00000546411 TDRD5Q8NAT2 981 aaKnown RBP16.06■□□□□ 0.16
CUX1-211ENST00000546411 P2RY11Q96G91 374 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 EBNA1BP2Q99848 306 aaKnown RBP16.06■□□□□ 0.16
CUX1-211ENST00000546411 ADAM2Q99965 735 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 LATS2Q9NRM7 1088 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 GGA2Q9UJY4 613 aa16.06■□□□□ 0.16
CUX1-211ENST00000546411 AAR2Q9Y312 384 aaKnown RBP16.06■□□□□ 0.16
CUX1-211ENST00000546411 ANGPT2O15123 496 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 HCRTO43612 131 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 ASPAP45381 313 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 NT5DC4Q86YG4 428 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 CEP70Q8NHQ1 597 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 GPAMQ9HCL2 828 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 AKAP10O43572 662 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 FBXO21O94952 628 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 NFKB1P19838 968 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 WDR4P57081 412 aaKnown RBP16.05■□□□□ 0.16
CUX1-211ENST00000546411 ESRRGP62508 458 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 SLC25A3Q00325 362 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 IMPG1Q17R60 797 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 SGO1Q5FBB7 561 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 UNC93AQ86WB7 457 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 RRAGCQ9HB90 399 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 TJP1Q07157 1748 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 SERPINE1P05121 402 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 CTXN3Q4LDR2 81 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 CAB39LQ9H9S4 337 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 EML4Q9HC35 981 aaKnown RBP16.05■□□□□ 0.16
CUX1-211ENST00000546411 SUFUQ9UMX1 484 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.05■□□□□ 0.16
CUX1-211ENST00000546411 PSMD3O43242 534 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 TSPAN1O60635 241 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 ALADP13716 330 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 PGAM1P18669 254 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 GRK2P25098 689 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 GRM5P41594 1212 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 GEMP55040 296 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 CDH17Q12864 832 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 ZRANB3Q5FWF4 1079 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 IZUMO2Q6UXV1 221 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 CCDC138Q96M89 665 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 CSPG4P5Q96PW8 444 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 OMDQ99983 421 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 TCF7L2Q9NQB0 619 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 CCDC88AQ3V6T2 1871 aa16.05■□□□□ 0.16
CUX1-211ENST00000546411 AP3B1O00203 1094 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 PPEF2O14830 753 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 BRCC3P46736 316 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 NDUFV1P49821 464 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 ILDR2Q71H61 639 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 MARK4Q96L34 752 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 ITGB4P16144 1822 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 BTBD19C9JJ37 291 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 TRIM13O60858 407 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 RHOBTB1O94844 696 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 MAPRE1Q15691 268 aaKnown RBP16.04■□□□□ 0.16
CUX1-211ENST00000546411 C9orf57Q5W0N0 161 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 TRMT10BQ6PF06 316 aaKnown RBP16.04■□□□□ 0.16
CUX1-211ENST00000546411 SMARCD1Q96GM5 515 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 HSFY1Q96LI6 401 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 ZNF670Q9BS34 389 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 HERPUD2Q9BSE4 406 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 MRPL46Q9H2W6 279 aaKnown RBP16.04■□□□□ 0.16
CUX1-211ENST00000546411 BATF3Q9NR55 127 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 ERI2A8K979 691 aaKnown RBP16.04■□□□□ 0.16
CUX1-211ENST00000546411 MATKP42679 507 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 UBAP2LQ14157 1087 aaKnown RBP16.04■□□□□ 0.16
CUX1-211ENST00000546411 TMPRSS6Q8IU80 811 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 CALML6Q8TD86 181 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 GPR152Q8TDT2 470 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 ZBED2Q9BTP6 218 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 PCDHGC3Q9UN70 934 aa16.04■□□□□ 0.16
CUX1-211ENST00000546411 CACNA1SQ13698 1873 aa16.03■□□□□ 0.16
CUX1-211ENST00000546411 MYH1P12882 1939 aa16.03■□□□□ 0.16
CUX1-211ENST00000546411 TRDMT1O14717 391 aaKnown RBP16.03■□□□□ 0.16
CUX1-211ENST00000546411 E2F6O75461 281 aa16.03■□□□□ 0.16
CUX1-211ENST00000546411 F7P08709 466 aaPredicted RBP16.03■□□□□ 0.16
CUX1-211ENST00000546411 ECHS1P30084 290 aa16.03■□□□□ 0.16
CUX1-211ENST00000546411 SLC39A12Q504Y0 691 aa16.03■□□□□ 0.16
CUX1-211ENST00000546411 RNF43Q68DV7 783 aa16.03■□□□□ 0.16
CUX1-211ENST00000546411 CCDC185Q8N715 623 aa16.03■□□□□ 0.16
CUX1-211ENST00000546411 STK32AQ8WU08 396 aa16.03■□□□□ 0.16
CUX1-211ENST00000546411 PYDC1Q8WXC3 89 aa16.03■□□□□ 0.16
CUX1-211ENST00000546411 TSPAN17Q96FV3 270 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms