RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 PTPAQ15257 358 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 SEC23BQ15437 767 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 TIGD2Q4W5G0 525 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 CBWD5Q5RIA9 395 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 TREML2Q5T2D2 321 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 FAM69AQ5T7M9 428 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 LIPMQ5VYY2 423 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 GRHL2Q6ISB3 625 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 KCNV1Q6PIU1 500 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 PCSK4Q6UW60 755 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 TMCO3Q6UWJ1 677 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 ATF7IPQ6VMQ6 1270 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 PIK3AP1Q6ZUJ8 805 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 MICALCLQ6ZW33 695 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 KRT27Q7Z3Y8 459 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 KRT77Q7Z794 578 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 NBPF5PQ86XG9 351 aaPredicted RBP3.61□□□□□ -1.83
CD44-229ENST00000528672 LDLRAD3Q86YD5 345 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 DIS3L2Q8IYB7 885 aaKnown RBP3.61□□□□□ -1.83
CD44-229ENST00000528672 IZUMO1Q8IYV9 350 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 LSMEM1Q8N8F7 131 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 LINS1Q8NG48 757 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 CUL5Q93034 780 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 FAM136AQ96C01 138 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 WDYHV1Q96HA8 205 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 PAAF1Q9BRP4 392 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 FUZQ9BT04 418 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 VN1R3Q9BXE9 311 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 EIF2B3Q9NR50 452 aaKnown RBP3.61□□□□□ -1.83
CD44-229ENST00000528672 TMEM74BQ9NUR3 256 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 FBXO28Q9NVF7 368 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 NKX1-2Q9UD57 310 aaPredicted RBP3.61□□□□□ -1.83
CD44-229ENST00000528672 TESQ9UGI8 421 aaKnown RBP3.61□□□□□ -1.83
CD44-229ENST00000528672 STEAP1Q9UHE8 339 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 VPS28Q9UK41 221 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 RIMKLBQ9ULI2 386 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 SUFUQ9UMX1 484 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 TBC1D3DA0A087WVF3 549 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TBC1D3IA0A087WXS9 549 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TBC1D3EA0A087X179 549 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TBC1D3KA0A087X1G2 549 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 BICDL2A1A5D9 508 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TBC1D3BA6NDS4 549 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TBC1D3FA6NER0 549 aaPredicted RBP3.6□□□□□ -1.83
CD44-229ENST00000528672 TBC1D3LB9A6J9 549 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 AP4M1O00189 453 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 AP3D1O14617 1153 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TSPAN4O14817 238 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 KIAA0355O15063 1070 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 FOXN1O15353 648 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 CTIFO43310 598 aaKnown RBP3.6□□□□□ -1.83
CD44-229ENST00000528672 HNRNPRO43390 633 aaKnown RBP3.6□□□□□ -1.83
CD44-229ENST00000528672 AHCYL1O43865 530 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TULP3O75386 442 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 URI1O94763 535 aaPredicted RBP3.6□□□□□ -1.83
CD44-229ENST00000528672 SCGB1D1O95968 90 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TBC1D3HP0C7X1 549 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TMEM225BP0DP42 221 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 NR2F6P10588 404 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 EGR2P11161 476 aaPredicted RBP3.6□□□□□ -1.83
CD44-229ENST00000528672 FPR3P25089 353 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 ADRA1BP35368 520 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 THBS4P35443 961 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 GGT5P36269 586 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 ARL3P36405 182 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 AVPR1BP47901 424 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TDO2P48775 406 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TIRAPP58753 221 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 RBM6P78332 1123 aaKnown RBP3.6□□□□□ -1.83
CD44-229ENST00000528672 PSG6Q00889 435 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TBL3Q12788 808 aaKnown RBP3.6□□□□□ -1.83
CD44-229ENST00000528672 SEMA3BQ13214 749 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 MPP3Q13368 585 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 BFSP2Q13515 415 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 CUL4AQ13619 759 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 ZKSCAN8Q15776 578 aaPredicted RBP3.6□□□□□ -1.83
CD44-229ENST00000528672 TBCCQ15814 346 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 CYP1B1Q16678 543 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 LRRC24Q50LG9 513 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 AWAT1Q58HT5 328 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 RILPL1Q5EBL4 403 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 ABHD17BQ5VST6 288 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 ANKRD40Q6AI12 368 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TBC1D3GQ6DHY5 549 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TBC1D3CQ6IPX1 549 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 CCDC144NLQ6NUI1 221 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 VWA1Q6PCB0 445 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 ENOSF1Q7L5Y1 443 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 TBC1D3Q8IZP1 549 aaPredicted RBP3.6□□□□□ -1.83
CD44-229ENST00000528672 TTC30BQ8N4P2 665 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 KCNG4Q8TDN1 519 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 OVCA2Q8WZ82 227 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 SLC9A6Q92581 669 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 BOD1Q96IK1 185 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 PPP1R10Q96QC0 940 aaKnown RBP3.6□□□□□ -1.83
CD44-229ENST00000528672 PIGSQ96S52 555 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 OSBPL9Q96SU4 736 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 AIFM2Q9BRQ8 373 aa3.6□□□□□ -1.83
CD44-229ENST00000528672 RSPH9Q9H1X1 276 aaPredicted RBP3.6□□□□□ -1.83
CD44-229ENST00000528672 TAOK3Q9H2K8 898 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms