RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 ABCG1P45844 678 aa6.56□□□□□ -1.36
PCF11-202ENST00000528336 YPEL5P62699 121 aa6.56□□□□□ -1.36
PCF11-202ENST00000528336 SIM2Q14190 667 aaPredicted RBP6.56□□□□□ -1.36
PCF11-202ENST00000528336 SRSF7Q16629 238 aaKnown RBP eCLIP6.56□□□□□ -1.36
PCF11-202ENST00000528336 CCDC142Q17RM4 750 aa6.56□□□□□ -1.36
PCF11-202ENST00000528336 AAK1Q2M2I8 961 aa6.56□□□□□ -1.36
PCF11-202ENST00000528336 PDILTQ8N807 584 aa6.56□□□□□ -1.36
PCF11-202ENST00000528336 HMGB4Q8WW32 186 aa6.56□□□□□ -1.36
PCF11-202ENST00000528336 GLMPQ8WWB7 406 aa6.56□□□□□ -1.36
PCF11-202ENST00000528336 FAR2Q96K12 515 aa6.56□□□□□ -1.36
PCF11-202ENST00000528336 MAGEH1Q9H213 219 aa6.56□□□□□ -1.36
PCF11-202ENST00000528336 CNTN6Q9UQ52 1028 aa6.56□□□□□ -1.36
PCF11-202ENST00000528336 ABCA5Q8WWZ7 1642 aa6.56□□□□□ -1.36
PCF11-202ENST00000528336 LOC105369274A0A096LPK9 316 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 LOC102723532A0A0G2JNH3 316 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 SMIM35A0A1B0GVV1 85 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 hCG_1642624A0A1W2PR95 340 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 DSCR3O14972 297 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 TCEA3O75764 348 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 CALRP27797 417 aaKnown RBP6.55□□□□□ -1.36
PCF11-202ENST00000528336 HOXD12P35452 270 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 STAT6P42226 847 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 RNASELQ05823 741 aaKnown RBP6.55□□□□□ -1.36
PCF11-202ENST00000528336 SF3A3Q12874 501 aaKnown RBP eCLIP6.55□□□□□ -1.36
PCF11-202ENST00000528336 KCTD2Q14681 263 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 KRT72Q14CN4 511 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 TIGD6Q17RP2 521 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 SUPT20HL1Q3ZLR7 823 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 LIN54Q6MZP7 749 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 SLC18B1Q6NT16 456 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 OR4N4Q8N0Y3 316 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 SCAMP5Q8TAC9 235 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 ZNF398Q8TD17 642 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 MAP4K1Q92918 833 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 SORBS1Q9BX66 1292 aaKnown RBP6.55□□□□□ -1.36
PCF11-202ENST00000528336 KCNK9Q9NPC2 374 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 TRPC5Q9UL62 973 aaPredicted RBP6.55□□□□□ -1.36
PCF11-202ENST00000528336 SLC12A4Q9UP95 1085 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 KIF27Q86VH2 1401 aa6.55□□□□□ -1.36
PCF11-202ENST00000528336 FAM90A18PA6NE21 464 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 FAM90A16PA6NEW6 464 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 CGB1A6NKQ9 187 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 FAM90A9PA6NNJ1 464 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 FAM90A5PA8MXJ8 464 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 RRHO14718 337 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 NKX2-8O15522 239 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 NBNO60934 754 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 FAM90A15PP0C7V4 464 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 FAM90A14PP0C7W9 464 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 PRR35P0CG20 571 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 FBLP22087 321 aaKnown RBP6.54□□□□□ -1.36
PCF11-202ENST00000528336 TACR3P29371 465 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 PNLIPRP1P54315 467 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 POLE2P56282 527 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 AP2B1P63010 937 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 RPS6KA2Q15349 733 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 FAM110CQ1W6H9 321 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 KIAA1614Q5VZ46 1190 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 WDR93Q6P2C0 686 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 TFAP2DQ7Z6R9 452 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 SLC44A2Q8IWA5 706 aaPredicted RBP6.54□□□□□ -1.36
PCF11-202ENST00000528336 SRRM1Q8IYB3 904 aaKnown RBP6.54□□□□□ -1.36
PCF11-202ENST00000528336 GALNT16Q8N428 558 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 RSC1A1Q92681 617 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 CELF1Q92879 486 aaKnown RBP6.54□□□□□ -1.36
PCF11-202ENST00000528336 NEUROD6Q96NK8 337 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 TM2D2Q9BX73 214 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 RNF26Q9BY78 433 aaPredicted RBP6.54□□□□□ -1.36
PCF11-202ENST00000528336 SEMA4CQ9C0C4 833 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 VPS16Q9H269 839 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 PABPC3Q9H361 631 aaKnown RBP6.54□□□□□ -1.36
PCF11-202ENST00000528336 NFU1Q9UMS0 254 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 DAPP1Q9UN19 280 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 B3GNT3Q9Y2A9 372 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 ZBTB1Q9Y2K1 713 aa6.54□□□□□ -1.36
PCF11-202ENST00000528336 SIRT4Q9Y6E7 314 aaPredicted RBP6.54□□□□□ -1.36
PCF11-202ENST00000528336 MAGI1Q96QZ7 1491 aaPredicted RBP6.53□□□□□ -1.36
PCF11-202ENST00000528336 TBC1D3DA0A087WVF3 549 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 TBC1D3IA0A087WXS9 549 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 TBC1D3EA0A087X179 549 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 TBC1D3KA0A087X1G2 549 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 TBC1D3BA6NDS4 549 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 TBC1D3FA6NER0 549 aaPredicted RBP6.53□□□□□ -1.36
PCF11-202ENST00000528336 HMX3A6NHT5 357 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 KCNU1A8MYU2 1149 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 TBC1D3LB9A6J9 549 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 KAT7O95251 611 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 TBC1D3HP0C7X1 549 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 SFPQP23246 707 aaKnown RBP eCLIP6.53□□□□□ -1.36
PCF11-202ENST00000528336 KELP23276 732 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 IDUAP35475 653 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 CASP2P42575 452 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 FAM3BP58499 235 aaPredicted RBP6.53□□□□□ -1.36
PCF11-202ENST00000528336 RPL15P61313 204 aaKnown RBP6.53□□□□□ -1.36
PCF11-202ENST00000528336 MTX3Q5HYI7 312 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 TBC1D3GQ6DHY5 549 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 TBC1D3CQ6IPX1 549 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 CCDC70Q6NSX1 233 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 SLC2A7Q6PXP3 512 aa6.53□□□□□ -1.36
PCF11-202ENST00000528336 RRAGAQ7L523 313 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms