RNA–Protein interactions for RNA: ENST00000503360.1

HMGB1P35-201, Transcript of high mobility group box 1 pseudogene 35, humanhuman

BASIC

Gene HMGB1P35, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P35-201ENST00000503360 DDX51Q8N8A6 666 aaKnown RBP eCLIP2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 PRSS3P2Q8NHM4 247 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 C16orf52Q8NHV5 167 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 SLC22A17Q8WUG5 538 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 HMGB4Q8WW32 186 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 OVCA2Q8WZ82 227 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 RSC1A1Q92681 617 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 C3orf49Q96BT1 292 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 PRR11Q96HE9 360 aaPredicted RBP2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 TRAPPC9Q96Q05 1148 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 DDX23Q9BUQ8 820 aaKnown RBP2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 FSD1LQ9BXM9 530 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 TAF1DQ9H5J8 278 aaPredicted RBP2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 ELAC1Q9H777 363 aaKnown RBP2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 SAP30LQ9HAJ7 183 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 USP29Q9HBJ7 922 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 SAYSD1Q9NPB0 183 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 SNX15Q9NRS6 342 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 KIF17Q9P2E2 1029 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 DAPP1Q9UN19 280 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 CNTN6Q9UQ52 1028 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 PCDHB7Q9Y5E2 793 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 PCDHB2Q9Y5E7 798 aa2.78□□□□□ -1.96
HMGB1P35-201ENST00000503360 EFCAB8A8MWE9 144 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 KCNU1A8MYU2 1149 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 B9A039 149 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 H0Y3Z8 333 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 M0QZQ0 153 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 EXOC3O60645 756 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 TMIGD3P0DMS9 266 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 CST5P28325 142 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 THBS4P35443 961 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 MAPK9P45984 424 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 COPB1P53618 953 aaKnown RBP2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 PRKAA2P54646 552 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 KRTAP10-5P60370 271 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 CYP4F2P78329 520 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 TXNL4AP83876 142 aaKnown RBP2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 SRSF1Q07955 248 aaKnown RBP eCLIP2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 CCDC15Q0P6D6 951 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 SF3A3Q12874 501 aaKnown RBP eCLIP2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 DNASE1L3Q13609 305 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 CUL4BQ13620 913 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 SEMA3AQ14563 771 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 RPS6KA2Q15349 733 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 ADCK5Q3MIX3 580 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 TRIM60Q495X7 471 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 RNASE12Q5GAN4 147 aaKnown RBP2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 ZNF569Q5MCW4 686 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 ANKRD45Q5TZF3 282 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 KIRREL2Q6UWL6 708 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 GSG1LQ6UXU4 331 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 C18orf65Q6ZTR6 163 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 USP43Q70EL4 1123 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 SFTPA1Q8IWL2 248 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 FTSJ3Q8IY81 847 aaKnown RBP2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 C12orf76Q8N812 135 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 PNPLA1Q8N8W4 532 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 FAM71DQ8N9W8 422 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 TERB1Q8NA31 727 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 OR6Y1Q8NGX8 325 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 CSGALNACT1Q8TDX6 532 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 AFG1LQ8WV93 481 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 RILPL2Q969X0 211 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 GCC1Q96CN9 775 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 REXO5Q96IC2 774 aaKnown RBP2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 ZSCAN31Q96LW9 406 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 CTAGE1Q96RT6 745 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 PAAF1Q9BRP4 392 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 THAP7Q9BT49 309 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 MECRQ9BV79 373 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 CINPQ9BW66 212 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 CIPCQ9C0C6 399 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 CCDC134Q9H6E4 229 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 SEPSECSQ9HD40 501 aaKnown RBP2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 VPS45Q9NRW7 570 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 FBXO28Q9NVF7 368 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 NFU1Q9UMS0 254 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 VPS4AQ9UN37 437 aa2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 C19orf53Q9UNZ5 99 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P35-201ENST00000503360 LOC105369274A0A096LPK9 316 aa2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 LOC102723532A0A0G2JNH3 316 aa2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 M0QYT0 321 aa2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 EIF3FO00303 357 aaPredicted RBP2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 PRAMEF2O60811 474 aa2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 FAM155BO75949 473 aa2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 KRT38O76015 456 aa2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 LARGE1O95461 756 aa2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 NHLRC4P0CG21 123 aaPredicted RBP2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 PEPDP12955 493 aa2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 SCP2P22307 547 aa2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 MMP8P22894 467 aa2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 SERPINA4P29622 427 aa2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 GALNSP34059 522 aa2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 ADD2P35612 726 aa2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 IGHMBP2P38935 993 aaKnown RBP2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 AARSP49588 968 aaKnown RBP eCLIP2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 NANOS2P60321 138 aaKnown RBP2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 GPC5P78333 572 aa2.76□□□□□ -1.97
HMGB1P35-201ENST00000503360 RNASELQ05823 741 aaKnown RBP2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms