RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 LILRA2Q8N149 483 aa9.3□□□□□ -0.92
HPS4-217ENST00000496385 SIX6OS1Q8N1H7 587 aa9.3□□□□□ -0.92
HPS4-217ENST00000496385 TTC30BQ8N4P2 665 aa9.3□□□□□ -0.92
HPS4-217ENST00000496385 NAT8LQ8N9F0 302 aa9.3□□□□□ -0.92
HPS4-217ENST00000496385 PKP2Q99959 881 aa9.3□□□□□ -0.92
HPS4-217ENST00000496385 TMEM79Q9BSE2 394 aa9.3□□□□□ -0.92
HPS4-217ENST00000496385 YTHDF1Q9BYJ9 559 aaKnown RBP9.3□□□□□ -0.92
HPS4-217ENST00000496385 KLHL25Q9H0H3 589 aa9.3□□□□□ -0.92
HPS4-217ENST00000496385 RMND5AQ9H871 391 aa9.3□□□□□ -0.92
HPS4-217ENST00000496385 MRPL40Q9NQ50 206 aaKnown RBP9.3□□□□□ -0.92
HPS4-217ENST00000496385 DAPK2Q9UIK4 370 aa9.3□□□□□ -0.92
HPS4-217ENST00000496385 SLC10A3P09131 477 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 KRT5P13647 590 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 ADSLP30566 484 aaPredicted RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 CRHR1P34998 444 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 MTMR2Q13614 643 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 PTK2BQ14289 1009 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 LLGL1Q15334 1064 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 ZNF394Q53GI3 561 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 PLA2G4FQ68DD2 849 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 SIGIRRQ6IA17 410 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 PLEKHA7Q6IQ23 1121 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 C16orf46Q6P387 395 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 XKR5Q6UX68 686 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 NSMFQ6X4W1 530 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 FRMD7Q6ZUT3 714 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 HEATR4Q86WZ0 1026 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 CATSPER3Q86XQ3 398 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 ERO1BQ86YB8 467 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 ARHGEF19Q8IW93 802 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 LSMEM2Q8N112 164 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 CADM3Q8N126 398 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 SLC15A4Q8N697 577 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 PNPT1Q8TCS8 783 aaKnown RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 PDCD6IPQ8WUM4 868 aaKnown RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 HPS1Q92902 700 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 TOP1MTQ969P6 601 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 YME1L1Q96TA2 773 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 ADAM33Q9BZ11 813 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 AGPAT3Q9NRZ7 376 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 CHORDC1Q9UHD1 332 aaPredicted RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 DOCK1Q14185 1865 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 GPR25O00155 361 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 DYNC1LI2O43237 492 aaPredicted RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 CLPXO76031 633 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 SORBS2O94875 1100 aaKnown RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 ASNSP08243 561 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 TRIM49P0CI25 452 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 TRIM49CP0CI26 452 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 KITP10721 976 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 KCNA2P16389 499 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 GABRB3P28472 473 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 ACADSBP45954 432 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 HMGCS2P54868 508 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 MRPS22P82650 360 aaKnown RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 SF3B4Q15427 424 aaKnown RBP eCLIP9.29□□□□□ -0.921e-9■■■■□ 23.3
HPS4-217ENST00000496385 PIGGQ5H8A4 983 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 LRRC38Q5VT99 294 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 BNC2Q6ZN30 1099 aaPredicted RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 GADL1Q6ZQY3 521 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 ZNF677Q86XU0 584 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 RHPN2Q8IUC4 686 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 MCOLN2Q8IZK6 566 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 PACRGLQ8N7B6 248 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 DNAJC5GQ8N7S2 189 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 PDZD8Q8NEN9 1154 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 ATP2A3Q93084 1043 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 DUS3LQ96G46 650 aaKnown RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 ZNF512Q96ME7 567 aaPredicted RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 ALPK1Q96QP1 1244 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 NPLQ9BXD5 320 aaPredicted RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 WDR12Q9GZL7 423 aaKnown RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 VRTNQ9H8Y1 702 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 MRPL47Q9HD33 250 aaKnown RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 PLIN4Q96Q06 1357 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 USP17L5A8MUK1 530 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 TRDMT1O14717 391 aaKnown RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 KRT6AP02538 564 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 KRT6BP04259 564 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 S100BP04271 92 aaPredicted RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 NTRK1P04629 796 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 BMP3P12645 472 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 CCNA2P20248 432 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 GRK2P25098 689 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 NOVP48745 357 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 CTBSQ01459 385 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 CHRNEQ04844 493 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 NFATC3Q12968 1075 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 TUBA3CQ13748 450 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 SUZ12Q15022 739 aaKnown RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 TIGD2Q4W5G0 525 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 AARS2Q5JTZ9 985 aaKnown RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 WDR78Q5VTH9 848 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 IGFN1Q86VF2 1251 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 DCP2Q8IU60 420 aaKnown RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 LRRC47Q8N1G4 583 aaKnown RBP9.29□□□□□ -0.92
HPS4-217ENST00000496385 GLIS1Q8NBF1 620 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 RNF169Q8NCN4 708 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 ACDQ96AP0 544 aa9.29□□□□□ -0.92
HPS4-217ENST00000496385 TMA16Q96EY4 203 aaKnown RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms