RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PNKPQ96T60 521 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 XPO4Q9C0E2 1151 aaKnown RBP12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 RBSNQ9H1K0 784 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 TBC1D14Q9P2M4 693 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 SUSD2Q9UGT4 822 aa12.45□□□□□ -0.42
SQSTM1-206ENST00000466342 MGAQ8IWI9 3026 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 TULP2O00295 520 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 COCHO43405 550 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 CBFA2T2O43439 604 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 GFPT2O94808 682 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 APODP05090 189 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 MBL2P11226 248 aaPredicted RBP12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 CYP11B1P15538 503 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 GNSP15586 552 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 STAT1P42224 750 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 TNFRSF4P43489 277 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 KIF11P52732 1056 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 KCNC4Q03721 635 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 GRIK2Q13002 908 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 FIGNQ5HY92 759 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 RAB41Q5JT25 222 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 SYCP2LQ5T4T6 812 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 DBX2Q6ZNG2 339 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 SFTPA1Q8IWL2 248 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 SLC35F5Q8WV83 523 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 KCTD13Q8WZ19 329 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 ZNF419Q96HQ0 510 aaPredicted RBP12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 CDC6Q99741 560 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 TTYH3Q9C0H2 523 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 TLR8Q9NR97 1041 aaKnown RBP12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 IGSF5Q9NSI5 407 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 SMPD4Q9NXE4 827 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 CFAP97Q9P2B7 532 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 PCDHGC3Q9UN70 934 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 MYLKQ15746 1914 aa12.44□□□□□ -0.42
SQSTM1-206ENST00000466342 ITIH6Q6UXX5 1313 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 TMEM131Q92545 1883 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 IGHV1OR15-9A0A0B4J2B8 117 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 FAM149AA5PLN7 773 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 ZNF217O75362 1048 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 KAT7O95251 611 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 ZNF883P0CG24 379 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 HLA-EP13747 358 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 GABRG2P18507 467 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 EIF2DP41214 584 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 GPD2P43304 727 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 SLC6A11P48066 632 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 DHCR24Q15392 516 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 DENND1BQ6P3S1 775 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 SARM1Q6SZW1 724 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 GPR155Q7Z3F1 870 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 NOP9Q86U38 636 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 EPS8L1Q8TE68 723 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 BAP1Q92560 729 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 NUP58Q9BVL2 599 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 EDEM3Q9BZQ6 932 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 LHX5Q9H2C1 402 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 CCSER2Q9H7U1 834 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 PRDM16Q9HAZ2 1276 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 LRRC4Q9HBW1 653 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 GMIPQ9P107 970 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 MYO6Q9UM54 1294 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 SCML2Q9UQR0 700 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 USP3Q9Y6I4 520 aa12.43□□□□□ -0.42
SQSTM1-206ENST00000466342 RRP8O43159 456 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 TLR5O60602 858 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 CYP17A1P05093 508 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 KRT9P35527 623 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 ATP5C1P36542 298 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 GRIA2P42262 883 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 RGS7P49802 495 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 TKTL1P51854 596 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 ADIGQ0VDE8 80 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 MESP2Q0VG99 397 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 SMAD1Q15797 465 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 WDR45BQ5MNZ6 344 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 PMF1Q6P1K2 205 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 RHBDF2Q6PJF5 856 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 PCSK4Q6UW60 755 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 CCDC186Q7Z3E2 898 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 FMNL3Q8IVF7 1028 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 ZNF276Q8N554 614 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 RHBDD1Q8TEB9 315 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 STK32AQ8WU08 396 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 IQCDQ96DY2 449 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 ZFRQ96KR1 1074 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 HSFY1Q96LI6 401 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 ZDHHC4Q9NPG8 344 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 CYLDQ9NQC7 956 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 TM7SF3Q9NS93 570 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 CALCOCO1Q9P1Z2 691 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 NOCTQ9UK39 431 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 SH3BP1Q9Y3L3 701 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 CABIN1Q9Y6J0 2220 aa12.42□□□□□ -0.42
SQSTM1-206ENST00000466342 A0A1W2PQJ5 194 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 LRRC53A6NM62 1247 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 GOLGA8CPA6NN73 597 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 NDUFS2O75306 463 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 ZBED1O96006 694 aa12.41□□□□□ -0.42
SQSTM1-206ENST00000466342 ADH1CP00326 375 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms