RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 DDIT4Q9NX09 232 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 MARCOQ9UEW3 520 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 CHORDC1Q9UHD1 332 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PCYOX1Q9UHG3 505 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PSME2Q9UL46 239 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 POLIQ9UNA4 740 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 NBPF26B4DH59 902 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 H0YC42 278 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PSMD12O00232 456 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 FCHO1O14526 889 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 SNPHO15079 494 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ACOT2P49753 483 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 CHN2P52757 468 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ANTXR2P58335 489 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ERVK-24P63145 666 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 CSNK2BP67870 215 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ROR2Q01974 943 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 VAC14Q08AM6 782 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 GRIK3Q13003 919 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 RGS21Q2M5E4 152 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 C10orf120Q5SQS8 335 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 POLNQ7Z5Q5 900 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 RNF180Q86T96 592 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 FBXO39Q8N4B4 442 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ALG13Q9NP73 1137 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 TIMMDC1Q9NPL8 285 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 TLR8Q9NR97 1041 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PNPLA3Q9NST1 481 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ZNF70Q9UC06 446 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 RAPGEFL1Q9UHV5 662 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 HAO1Q9UJM8 370 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 LEF1Q9UJU2 399 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 BTBD3Q9Y2F9 522 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 NRXN1Q9ULB1 1477 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 UMODL1Q5DID0 1318 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 SPATA31A6Q5VVP1 1343 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 A0A087X0T9 212 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 A0A1W2PQ67 120 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ZSCAN5CA6NGD5 496 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 GRIN3BO60391 1043 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 SYNCRIPO60506 623 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PLA2G6O60733 806 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 CAMTA2O94983 1202 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ASS1P00966 412 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 FAM228BP0C875 321 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 FDPSP14324 419 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 LBPP18428 481 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 DGKAP23743 735 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PTX3P26022 381 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 NPTX2P47972 431 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 RPL26P61254 145 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ATP6V0D1P61421 351 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ZNF846Q147U1 533 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 NKX1-1Q15270 411 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PKN1Q16512 942 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 LIN54Q6MZP7 749 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PRR23BQ6ZRT6 265 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PTF1AQ7RTS3 328 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PIWIL4Q7Z3Z4 852 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 SEPT12Q8IYM1 358 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ANKRD13AQ8IZ07 590 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 MCOLN2Q8IZK6 566 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 MINDY2Q8NBR6 621 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 GDPD5Q8WTR4 605 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 CKAP2Q8WWK9 683 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 MYLK2Q9H1R3 596 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 TMEM134Q9H6X4 195 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 NAALADL1Q9UQQ1 740 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 NEURL4Q96JN8 1562 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 QRICH2Q9H0J4 1663 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 LOC102724159A0A0B4J2E5 919 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 LOC100653049A0A140TA62 436 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 SLC28A1O00337 649 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PRMT5O14744 637 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 UBOX5O94941 541 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ACADLP28330 430 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 S100GP29377 79 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ACTR3P61158 418 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 FASTKQ14296 549 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PWP2Q15269 919 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PTPN21Q16825 1174 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 NDUFAF6Q330K2 333 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 RFTN2Q52LD8 501 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ABRAXAS1Q6UWZ7 409 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 KIAA0408Q6ZU52 694 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 MTSS1LQ765P7 747 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 OTOAQ7RTW8 1153 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 KIF2BQ8N4N8 673 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 OR6Y1Q8NGX8 325 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PNPT1Q8TCS8 783 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 FUCA2Q9BTY2 467 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 RIOX1Q9H6W3 641 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 MIEF1Q9NQG6 463 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 DDX20Q9UHI6 824 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 SFMBT1Q9UHJ3 866 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ING4Q9UNL4 249 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 RWDD3Q9Y3V2 267 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PCDHB7Q9Y5E2 793 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 GMEB1Q9Y692 573 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 CLTCL1P53675 1640 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms