RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SURF1Q15526 300 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 CCL14Q16627 93 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 PTPN20Q4JDL3 420 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 TMEM177Q53S58 311 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 RAB41Q5JT25 222 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 ZNF618Q5T7W0 954 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 ACAD10Q6JQN1 1059 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 MTHFD1LQ6UB35 978 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 VSTM1Q6UX27 236 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 GBP6Q6ZN66 633 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 ARMCX2Q7L311 632 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 SESTD1Q86VW0 696 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 TTC30AQ86WT1 665 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 XYLT1Q86Y38 959 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 GPD1LQ8N335 351 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 MYCT1Q8N699 235 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 SLC35B2Q8TB61 432 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 PRPF31Q8WWY3 499 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 KCTD13Q8WZ19 329 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 GOLGA1Q92805 767 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 KIFAP3Q92845 792 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 C18orf8Q96DM3 657 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 NSMCE3Q96MG7 304 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 PPP1R10Q96QC0 940 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 ACCSQ96QU6 501 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 CARD9Q9H257 536 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 TMBIM4Q9HC24 238 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 PDE11AQ9HCR9 933 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 SLTMQ9NWH9 1034 aaKnown RBP eCLIP2.45□□□□□ -2.02
VPS54-202ENST00000354504 C14orf119Q9NWQ9 140 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 DDX20Q9UHI6 824 aaKnown RBP2.45□□□□□ -2.02
VPS54-202ENST00000354504 TNFSF13BQ9Y275 285 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 HYOU1Q9Y4L1 999 aa2.45□□□□□ -2.02
VPS54-202ENST00000354504 NUP210LQ5VU65 1888 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CLUHO75153 1309 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CKAP5Q14008 2032 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 MACROD2A1Z1Q3 448 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 A6NNZ2 444 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 K7ENM7 598 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 NOP56O00567 594 aaKnown RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 KRT37O76014 449 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 ERBB2P04626 1255 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 LGALS2P05162 132 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 ARF4P18085 180 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 NAT1P18440 290 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 TRIM21P19474 475 aaKnown RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 SCP2P22307 547 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 PMLP29590 882 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 HSD17B3P37058 310 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CDKN2BP42772 138 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 GPX6P59796 221 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 MYL7Q01449 175 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 GABPB1Q06547 395 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 ADCY1Q08828 1119 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 TAF5Q15542 800 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 ATP13A4Q4VNC1 1196 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 GLE1Q53GS7 698 aaKnown RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 FAM182AQ5T1J6 154 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 LMBRD2Q68DH5 695 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 HIBCHQ6NVY1 386 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 OLFML1Q6UWY5 402 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 GPR142Q7Z601 462 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 MTDHQ86UE4 582 aaKnown RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 RTN4RL1Q86UN2 441 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 WDR49Q8IV35 697 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 RNF168Q8IYW5 571 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 ATL2Q8NHH9 583 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 SLC35F5Q8WV83 523 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CYFIP2Q96F07 1278 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 SNX27Q96L92 541 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 RAB34Q9BZG1 259 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 TSGA10Q9BZW7 698 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 LHX5Q9H2C1 402 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 TMEM206Q9H813 350 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 SP110Q9HB58 689 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 RC3H2Q9HBD1 1191 aaKnown RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 USP29Q9HBJ7 922 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 GBA2Q9HCG7 927 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 HOXC10Q9NYD6 342 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 ADAM21Q9UKJ8 722 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 MAPRE3Q9UPY8 281 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 BZW2Q9Y6E2 419 aaKnown RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 ZFC3H1O60293 1989 aaKnown RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 TCRBV7S3A2A0A539 114 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 FOXO6A8MYZ6 492 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 K7ESF4 209 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CBX4O00257 560 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 ACKR2O00590 384 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 WNT9AO14904 365 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CETN3O15182 167 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CCP110O43303 1012 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CACNG3O60359 315 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 EFCAB14O75071 495 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 BEST1O76090 585 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 URI1O94763 535 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 ZNF205O95201 554 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 WISP3O95389 354 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 WNT11O96014 354 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 HLA-DRAP01903 254 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms