RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 SMIM31A0A1B0GVY4 71 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 CCDC154A6NI56 674 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 MICAL2O94851 1124 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 IFNA16P05015 189 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 RBP1P09455 135 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 FGFR3P22607 806 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 CDH8P55286 799 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 CYP24A1Q07973 514 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 GIT2Q14161 759 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 ZNF544Q6NX49 715 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 TRAPPC5Q8IUR0 188 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 FAM20CQ8IXL6 584 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 MRPL48Q96GC5 212 aaKnown RBP12.89□□□□□ -0.35
SDC3-201ENST00000336798 KIFC1Q9BW19 673 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 ARMC7Q9H6L4 198 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 TBC1D13Q9NVG8 400 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 ZNF112Q9UJU3 913 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 TSPAN16Q9UKR8 245 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 DNALI1O14645 258 aaPredicted RBP12.89□□□□□ -0.35
SDC3-201ENST00000336798 USP17L7P0C7H9 530 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 ABCG1P45844 678 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 MIIPQ5JXC2 388 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 MAP1SQ66K74 1059 aaPredicted RBP12.89□□□□□ -0.35
SDC3-201ENST00000336798 FBXO33Q7Z6M2 555 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 MIEF2Q96C03 454 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 C19orf60Q96EN9 201 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 PNMA5Q96PV4 448 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 KLHL4Q9C0H6 718 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 ZNF624Q9P2J8 865 aaPredicted RBP12.89□□□□□ -0.35
SDC3-201ENST00000336798 PTGES3LE9PB15 166 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 BTN3A1O00481 513 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 MTA2O94776 668 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 MAGEA10P43363 369 aaPredicted RBP12.89□□□□□ -0.35
SDC3-201ENST00000336798 ITGA9Q13797 1035 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 PDZK1Q5T2W1 519 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 PLA2G12BQ9BX93 195 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 TAGLN3Q9UI15 199 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 NCKAP1Q9Y2A7 1128 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 RPS12P25398 132 aaKnown RBP12.89□□□□□ -0.35
SDC3-201ENST00000336798 PTPN11Q06124 597 aaPredicted RBP12.89□□□□□ -0.35
SDC3-201ENST00000336798 PPATQ06203 517 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 TRIQKQ629K1 86 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 IZUMO2Q6UXV1 221 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 FBXO39Q8N4B4 442 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 FAM45AQ8TCE6 357 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 MARK4Q96L34 752 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 RAD21L1Q9H4I0 556 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 AGO4Q9HCK5 861 aaKnown RBP12.89□□□□□ -0.35
SDC3-201ENST00000336798 PDP2Q9P2J9 529 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 RAD54BQ9Y620 910 aa12.89□□□□□ -0.35
SDC3-201ENST00000336798 RBAK-RBAKDNI3L0D1 243 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 GMFGO60234 142 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 INSRRP14616 1297 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 PAICSP22234 425 aaKnown RBP12.88□□□□□ -0.35
SDC3-201ENST00000336798 ARF5P84085 180 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 SETMARQ53H47 684 aaPredicted RBP12.88□□□□□ -0.35
SDC3-201ENST00000336798 ZCCHC23Q6ZST2 131 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 KCNMB4Q86W47 210 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 RSPH1Q8WYR4 309 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 A1CFQ9NQ94 594 aaKnown RBP12.88□□□□□ -0.35
SDC3-201ENST00000336798 RPRD1BQ9NQG5 326 aaKnown RBP12.88□□□□□ -0.35
SDC3-201ENST00000336798 NCKIPSDQ9NZQ3 722 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 ADAM30Q9UKF2 790 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 AP4S1Q9Y587 144 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 CAPN6Q9Y6Q1 641 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 TRDMT1O14717 391 aaKnown RBP12.88□□□□□ -0.35
SDC3-201ENST00000336798 LPIN1Q14693 890 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 MILR1Q7Z6M3 343 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 S100A13Q99584 98 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 GPR75-ASB3A0A0A6YYF3 556 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 BUD23O43709 281 aaKnown RBP12.88□□□□□ -0.35
SDC3-201ENST00000336798 USP12O75317 370 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 OR6B1O95007 311 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 BEX3Q00994 111 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 UTS2BQ765I0 119 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 RNF145Q96MT1 663 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 MROH8Q9H579 483 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 POMKQ9H5K3 350 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 H3BRB1 525 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 RAD51BO15315 384 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 GAS2O43903 313 aaKnown RBP12.88□□□□□ -0.35
SDC3-201ENST00000336798 FBXO21O94952 628 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 NFKB1P19838 968 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 C4BPBP20851 252 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 BDNFP23560 247 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 RABL6Q3YEC7 729 aaPredicted RBP12.88□□□□□ -0.35
SDC3-201ENST00000336798 POU5F2Q8N7G0 328 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 MOSPD2Q8NHP6 518 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 VPS33AQ96AX1 596 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 MYOCQ99972 504 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 PABPC3Q9H361 631 aaKnown RBP12.88□□□□□ -0.35
SDC3-201ENST00000336798 SEMA6BQ9H3T3 888 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 TUT1Q9H6E5 874 aaKnown RBP12.88□□□□□ -0.35
SDC3-201ENST00000336798 KLHL3Q9UH77 587 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 LAMC1P11047 1609 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 TMEM114B3SHH9 223 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 VAPBO95292 243 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 SERPINF2P08697 491 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 PTPN3P26045 913 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 HNF4AP41235 474 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms