RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 ADGRE3Q9BY15 652 aa5.61□□□□□ -1.51
SMAD4-216ENST00000593223 WDR12Q9GZL7 423 aaKnown RBP5.61□□□□□ -1.51
SMAD4-216ENST00000593223 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.61□□□□□ -1.51
SMAD4-216ENST00000593223 VPS45Q9NRW7 570 aa5.61□□□□□ -1.51
SMAD4-216ENST00000593223 IGSF9Q9P2J2 1179 aa5.61□□□□□ -1.51
SMAD4-216ENST00000593223 DTNAQ9Y4J8 743 aa5.61□□□□□ -1.51
SMAD4-216ENST00000593223 UGGT2Q9NYU1 1516 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 BCL9LQ86UU0 1499 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 GOLGA6L3A6NEY3 463 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 AQP12BA6NM10 295 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 PRAMEF2O60811 474 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 CBFA2T3O75081 653 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 RNF8O76064 485 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 SLC3A2P08195 630 aaKnown RBP5.6□□□□□ -1.51
SMAD4-216ENST00000593223 MMP8P22894 467 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 MAN1A1P33908 653 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 GALNSP34059 522 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 MRPS21P82921 87 aaKnown RBP5.6□□□□□ -1.51
SMAD4-216ENST00000593223 POU5F1BQ06416 359 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 SRSF4Q08170 494 aaKnown RBP5.6□□□□□ -1.51
SMAD4-216ENST00000593223 LARS2Q15031 903 aaKnown RBP5.6□□□□□ -1.51
SMAD4-216ENST00000593223 AWAT1Q58HT5 328 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 CCDC144NLQ6NUI1 221 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 LINC01465Q8N7H1 131 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 POF1BQ8WVV4 589 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 OVCA2Q8WZ82 227 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 DDB2Q92466 427 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 DPF1Q92782 380 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 SLC39A13Q96H72 371 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 OBP2BQ9NPH6 170 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 FZD4Q9ULV1 537 aa5.6□□□□□ -1.51
SMAD4-216ENST00000593223 DNMT1P26358 1616 aaKnown RBP5.59□□□□□ -1.51
SMAD4-216ENST00000593223 CDK13Q14004 1512 aaKnown RBP5.59□□□□□ -1.51
SMAD4-216ENST00000593223 NPHP4O75161 1426 aaPredicted RBP5.59□□□□□ -1.51
SMAD4-216ENST00000593223 CNTLNQ9NXG0 1405 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 OVOL3O00110 214 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 SKAP2O75563 359 aaPredicted RBP5.59□□□□□ -1.51
SMAD4-216ENST00000593223 NTSR2O95665 410 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 CYP2A6P11509 494 aaPredicted RBP5.59□□□□□ -1.51
SMAD4-216ENST00000593223 NPPBP16860 134 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 AKT1P31749 480 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 COPB2P35606 906 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 IGHMBP2P38935 993 aaKnown RBP5.59□□□□□ -1.51
SMAD4-216ENST00000593223 JAK3P52333 1124 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 C21orf58P58505 322 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 RAE1P78406 368 aaKnown RBP5.59□□□□□ -1.51
SMAD4-216ENST00000593223 ICA1Q05084 483 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 SPARCL1Q14515 664 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 PUM3Q15397 648 aaKnown RBP5.59□□□□□ -1.51
SMAD4-216ENST00000593223 ZRSR2Q15696 482 aaKnown RBP5.59□□□□□ -1.51
SMAD4-216ENST00000593223 ELF2Q15723 593 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 FAM90A2PQ658T7 463 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 RANBP10Q6VN20 620 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 RINLQ6ZS11 566 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 CLASRPQ8N2M8 674 aaKnown RBP5.59□□□□□ -1.51
SMAD4-216ENST00000593223 NTN5Q8WTR8 489 aaPredicted RBP5.59□□□□□ -1.51
SMAD4-216ENST00000593223 C5orf34Q96MH7 638 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 ADARB2Q9NS39 739 aaKnown RBP5.59□□□□□ -1.51
SMAD4-216ENST00000593223 FBXO28Q9NVF7 368 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 MAFFQ9ULX9 164 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 XIRP1Q702N8 1843 aaKnown RBP5.59□□□□□ -1.51
SMAD4-216ENST00000593223 PHLPP1O60346 1717 aa5.59□□□□□ -1.51
SMAD4-216ENST00000593223 POLR1AO95602 1720 aaPredicted RBP5.59□□□□□ -1.51
SMAD4-216ENST00000593223 BIVM-ERCC5R4GMW8 1640 aa5.59□□□□□ -1.52
SMAD4-216ENST00000593223 LGALS16A8MUM7 142 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 H3BNC9 293 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 PCDH17O14917 1159 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 ASNA1O43681 348 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 ZNF500O60304 480 aaPredicted RBP5.58□□□□□ -1.52
SMAD4-216ENST00000593223 ANXA6P08133 673 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 ALADP13716 330 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 MPGP29372 298 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 WDR5P61964 334 aaKnown RBP5.58□□□□□ -1.52
SMAD4-216ENST00000593223 CBFBQ13951 182 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 TRIM14Q14142 442 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 DHX8Q14562 1220 aaKnown RBP5.58□□□□□ -1.52
SMAD4-216ENST00000593223 CNGA3Q16281 694 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 PFKFB3Q16875 520 aaPredicted RBP5.58□□□□□ -1.52
SMAD4-216ENST00000593223 PFKFB4Q16877 469 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 RINT1Q6NUQ1 792 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 MIS18BP1Q6P0N0 1132 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 PIK3AP1Q6ZUJ8 805 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 AFAP1Q8N556 730 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 ENAHQ8N8S7 591 aaPredicted RBP5.58□□□□□ -1.52
SMAD4-216ENST00000593223 ATG16L2Q8NAA4 619 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 STYXQ8WUJ0 223 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 WDR60Q8WVS4 1066 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 HIC2Q96JB3 615 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 EFHD1Q9BUP0 239 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 TMEM8AQ9HCN3 771 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 FSCN3Q9NQT6 498 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 ARL8BQ9NVJ2 186 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 LRFN1Q9P244 771 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 SCINQ9Y6U3 715 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 AGLP35573 1532 aa5.58□□□□□ -1.52
SMAD4-216ENST00000593223 CARMIL1Q5VZK9 1371 aa5.57□□□□□ -1.52
SMAD4-216ENST00000593223 TTC34A8MYJ7 566 aa5.57□□□□□ -1.52
SMAD4-216ENST00000593223 NPC1O15118 1278 aa5.57□□□□□ -1.52
SMAD4-216ENST00000593223 DNPH1O43598 174 aa5.57□□□□□ -1.52
SMAD4-216ENST00000593223 TAF5LO75529 589 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms