RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 IGLV3-27P01718 113 aa19.5■□□□□ 0.71
CLN3-218ENST00000565688 LTFP02788 710 aa19.5■□□□□ 0.71
CLN3-218ENST00000565688 COPAP53621 1224 aa19.5■□□□□ 0.71
CLN3-218ENST00000565688 RING1Q06587 406 aa19.5■□□□□ 0.71
CLN3-218ENST00000565688 CAMK2GQ13555 558 aaPredicted RBP19.5■□□□□ 0.71
CLN3-218ENST00000565688 UNQ6494/PRO21346Q6UXR6 183 aa19.5■□□□□ 0.71
CLN3-218ENST00000565688 AHI1Q8N157 1196 aa19.5■□□□□ 0.71
CLN3-218ENST00000565688 OR2T3Q8NH03 318 aa19.5■□□□□ 0.71
CLN3-218ENST00000565688 LMO3Q8TAP4 145 aa19.5■□□□□ 0.71
CLN3-218ENST00000565688 NELFBQ8WX92 580 aa19.5■□□□□ 0.71
CLN3-218ENST00000565688 AZIN2Q96A70 460 aa19.5■□□□□ 0.71
CLN3-218ENST00000565688 PCED1AQ9H1Q7 454 aa19.5■□□□□ 0.71
CLN3-218ENST00000565688 FBRSQ9HAH7 460 aa19.5■□□□□ 0.71
CLN3-218ENST00000565688 ABCB8Q9NUT2 735 aa19.5■□□□□ 0.71
CLN3-218ENST00000565688 A0A1B0GTW7 788 aa19.49■□□□□ 0.71
CLN3-218ENST00000565688 PPP1R3GB7ZBB8 358 aa19.49■□□□□ 0.71
CLN3-218ENST00000565688 RNF225M0QZC1 329 aaPredicted RBP19.49■□□□□ 0.71
CLN3-218ENST00000565688 ATP5BP06576 529 aaKnown RBP19.49■□□□□ 0.71
CLN3-218ENST00000565688 BRD2P25440 801 aaKnown RBP19.49■□□□□ 0.71
CLN3-218ENST00000565688 RDXP35241 583 aaKnown RBP19.49■□□□□ 0.71
CLN3-218ENST00000565688 SIM1P81133 766 aaPredicted RBP19.49■□□□□ 0.71
CLN3-218ENST00000565688 FNDC3BQ53EP0 1204 aaKnown RBP19.49■□□□□ 0.71
CLN3-218ENST00000565688 CHST9Q7L1S5 443 aa19.49■□□□□ 0.71
CLN3-218ENST00000565688 KIAA0907Q7Z7F0 614 aaPredicted RBP19.49■□□□□ 0.71
CLN3-218ENST00000565688 EHBP1Q8NDI1 1231 aa19.49■□□□□ 0.71
CLN3-218ENST00000565688 KAT5Q92993 513 aa19.49■□□□□ 0.71
CLN3-218ENST00000565688 ZSWIM1Q9BR11 485 aa19.49■□□□□ 0.71
CLN3-218ENST00000565688 ADAM33Q9BZ11 813 aa19.49■□□□□ 0.71
CLN3-218ENST00000565688 TMEM245Q9H330 911 aa19.49■□□□□ 0.71
CLN3-218ENST00000565688 GGA2Q9UJY4 613 aa19.49■□□□□ 0.71
CLN3-218ENST00000565688 CACNA1EQ15878 2313 aa19.49■□□□□ 0.71
CLN3-218ENST00000565688 CKAP5Q14008 2032 aa19.49■□□□□ 0.71
CLN3-218ENST00000565688 AKAP13Q12802 2813 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 PCNX2A6NKB5 2137 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 METTL12A8MUP2 240 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 PIK3R2O00459 728 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 SART1O43290 800 aaKnown RBP19.48■□□□□ 0.71
CLN3-218ENST00000565688 GABBR2O75899 941 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 C7P10643 843 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 PABPC1P11940 636 aaKnown RBP19.48■□□□□ 0.71
CLN3-218ENST00000565688 CD59P13987 128 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 BMP6P22004 513 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 MAOBP27338 520 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 TBX4P57082 545 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 KCNH2Q12809 1159 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 MORC3Q14149 939 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 PIK3R6Q5UE93 754 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 RRAGAQ7L523 313 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 ADIPOR2Q86V24 386 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 TRIM59Q8IWR1 403 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 DDX50Q9BQ39 737 aaKnown RBP19.48■□□□□ 0.71
CLN3-218ENST00000565688 SCNM1Q9BWG6 230 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 CTNND2Q9UQB3 1225 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 ADAMTS9Q9P2N4 1935 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 CFAP47Q6ZTR5 3102 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 IGF2RP11717 2491 aa19.48■□□□□ 0.71
CLN3-218ENST00000565688 SPAARA0A1B0GVQ0 90 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 TMEM8BA6NDV4 472 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 C1QTNF9BB2RNN3 333 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 H0Y626 953 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 ZZEF1O43149 2961 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 ACSL4O60488 711 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 GJB3O75712 270 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 TRIM16O95361 564 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 DLDP09622 509 aaKnown RBP19.47■□□□□ 0.71
CLN3-218ENST00000565688 C1QTNF9P0C862 333 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 HLA-EP13747 358 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 MARSP56192 900 aaKnown RBP19.47■□□□□ 0.71
CLN3-218ENST00000565688 GRIK2Q13002 908 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 NNTQ13423 1086 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 DCAF12L1Q5VU92 463 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 OR2I1PQ8NGU4 316 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 CYB5D2Q8WUJ1 264 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 SERPINB11Q96P15 392 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 TRIM62Q9BVG3 475 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 MIR1-1HGQ9H1L0 117 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 LHX5Q9H2C1 402 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 CNTN6Q9UQ52 1028 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 NEUROG3Q9Y4Z2 214 aa19.47■□□□□ 0.71
CLN3-218ENST00000565688 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.47■□□□□ 0.71
CLN3-218ENST00000565688 TYW5A2RUC4 315 aaKnown RBP19.46■□□□□ 0.71
CLN3-218ENST00000565688 BCAT2O15382 392 aaPredicted RBP19.46■□□□□ 0.71
CLN3-218ENST00000565688 TBL1XO60907 577 aa19.46■□□□□ 0.71
CLN3-218ENST00000565688 FGFR1OPO95684 399 aaKnown RBP19.46■□□□□ 0.71
CLN3-218ENST00000565688 AFPP02771 609 aaKnown RBP19.46■□□□□ 0.71
CLN3-218ENST00000565688 POLR2EP19388 210 aaKnown RBP19.46■□□□□ 0.71
CLN3-218ENST00000565688 SPINK2P20155 84 aa19.46■□□□□ 0.71
CLN3-218ENST00000565688 ACADSBP45954 432 aa19.46■□□□□ 0.71
CLN3-218ENST00000565688 SGSHP51688 502 aa19.46■□□□□ 0.71
CLN3-218ENST00000565688 ZBTB16Q05516 673 aa19.46■□□□□ 0.71
CLN3-218ENST00000565688 PAK1Q13153 545 aa19.46■□□□□ 0.71
CLN3-218ENST00000565688 MEA1Q16626 185 aa19.46■□□□□ 0.71
CLN3-218ENST00000565688 PTPRNQ16849 979 aa19.46■□□□□ 0.71
CLN3-218ENST00000565688 FAM133BQ5BKY9 247 aaKnown RBP19.46■□□□□ 0.71
CLN3-218ENST00000565688 MBLAC2Q68D91 279 aa19.46■□□□□ 0.71
CLN3-218ENST00000565688 RFWD3Q6PCD5 774 aa19.46■□□□□ 0.71
CLN3-218ENST00000565688 CACUL1Q86Y37 369 aa19.46■□□□□ 0.71
CLN3-218ENST00000565688 ARHGEF19Q8IW93 802 aa19.46■□□□□ 0.71
CLN3-218ENST00000565688 ZCCHC9Q8N567 271 aaKnown RBP19.46■□□□□ 0.71
CLN3-218ENST00000565688 KDF1Q8NAX2 398 aaPredicted RBP19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms