RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 MYH13Q9UKX3 1938 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 UBA6A0AVT1 1052 aaPredicted RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 TRPC5OSA6NMA1 111 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 M0QZ92 97 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 OGTO15294 1046 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 XPOTO43592 962 aaKnown RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 RTN3O95197 1032 aaPredicted RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 IL18RAPO95256 599 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 TRUB2O95900 331 aaKnown RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 CFHP08603 1231 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 HSPA1AP0DMV8 641 aaKnown RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 HSPA1BP0DMV9 641 aaKnown RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 HADHAP40939 763 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 NUMBP49757 651 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 AKR1D1P51857 326 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 GAD2Q05329 585 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 PTPN11Q06124 597 aaPredicted RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 USP4Q13107 963 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 ANO4Q32M45 955 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 C6orf52Q5T4I8 152 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 EFCAB12Q6NXP0 572 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 FAM131BQ86XD5 332 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.29□□□□□ -1.24
USP3-210ENST00000559192 CDC26Q8NHZ8 85 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 PDCD2LQ9BRP1 358 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 TUBA8Q9NY65 449 aaPredicted RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 KIF17Q9P2E2 1029 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 AP4B1Q9Y6B7 739 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 MRPL42Q9Y6G3 142 aaKnown RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 ATP8B3O60423 1300 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 ADGRA2Q96PE1 1338 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 NR5A2O00482 541 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 USP12O75317 370 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 MTA2O94776 668 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 ITGB5P18084 799 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 DSG3P32926 999 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 ADRM1Q16186 407 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 ZC3H12AQ5D1E8 599 aaKnown RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 C4orf22Q6V702 233 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 BSNDQ8WZ55 320 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 LPAR1Q92633 364 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 DCUN1D1Q96GG9 259 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 MAML3Q96JK9 1138 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 HOXC10Q9NYD6 342 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 TIAM2Q8IVF5 1701 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 C3orf70A6NLC5 250 aaPredicted RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 SNX2O60749 519 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 H2AFYO75367 372 aaKnown RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 PGAM1P18669 254 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 MMP14P50281 582 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 SFSWAPQ12872 951 aaKnown RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 DCTN2Q13561 401 aaKnown RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 KRT72Q14CN4 511 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 NEDD8Q15843 81 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 AGKQ53H12 422 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 SCUBE3Q8IX30 993 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 BANPQ8N9N5 519 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 RDM1Q8NG50 284 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 QKIQ96PU8 341 aaKnown RBP eCLIP7.29□□□□□ -1.241e-15■■■■■ 29.2
USP3-210ENST00000559192 GLIS2Q9BZE0 524 aaPredicted RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 TMEM245Q9H330 911 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 WDR41Q9HAD4 459 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 TAS2R1Q9NYW7 299 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 CDH22Q9UJ99 828 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 TCRBV7S3A2A0A539 114 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 SPDYE16A6NNV3 312 aaPredicted RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 PSMA4P25789 261 aaKnown RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 RPL5P46777 297 aaKnown RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 NRLP54845 237 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 RUNX1T1Q06455 604 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 MGAT5Q09328 741 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 TAF5Q15542 800 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 SPDYE2Q495Y8 402 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 GLRA4Q5JXX5 417 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 RSBN1Q5VWQ0 802 aaPredicted RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 KYAT3Q6YP21 454 aaKnown RBP7.29□□□□□ -1.24
USP3-210ENST00000559192 FBXW8Q8N3Y1 598 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 FLAD1Q8NFF5 587 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 SEC14L1Q92503 715 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 MFSD14AQ96MC6 490 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 BBS2Q9BXC9 721 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 TXLNGYQ9BZA5 131 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 ZFYVE1Q9HBF4 777 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 CYLDQ9NQC7 956 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 CHST12Q9NRB3 414 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 DPP3Q9NY33 737 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 MYRFQ9Y2G1 1151 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 PLLPQ9Y342 182 aa7.29□□□□□ -1.24
USP3-210ENST00000559192 LAMB4A4D0S4 1761 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 IGLV3-22A0A075B6J6 115 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 A0A096LPK6 155 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 ZNF839A8K0R7 811 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 E5RJQ4 531 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 TRDMT1O14717 391 aaKnown RBP7.28□□□□□ -1.24
USP3-210ENST00000559192 FDX1P10109 184 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 USP46P62068 366 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 SPIRE1Q08AE8 756 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 TAF12Q16514 161 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 CCDC153Q494R4 210 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 PATL1Q86TB9 770 aaKnown RBP7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms