RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ZNF143P52747 638 aaPredicted RBP12.98□□□□□ -0.33
USP53-209ENST00000514665 SYTL3Q4VX76 610 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 TTC27Q6P3X3 843 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 CYP2R1Q6VVX0 501 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 OR9Q1Q8NGQ5 310 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 GAD1Q99259 594 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 NMRAL1Q9HBL8 299 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 ZFYVE28Q9HCC9 887 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 CCDC167Q9P0B6 97 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 FAM32AQ9Y421 112 aaKnown RBP12.98□□□□□ -0.33
USP53-209ENST00000514665 RIPK3Q9Y572 518 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 EVPLLA8MZ36 301 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 F5H5T6 163 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 GPR182O15218 404 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 PIGNO95427 931 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 NR2C2P49116 596 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 HIRAP54198 1017 aaPredicted RBP12.98□□□□□ -0.33
USP53-209ENST00000514665 NCKAP1LP55160 1127 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 SLC25A3Q00325 362 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 ARHGEF7Q14155 803 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 TIGD7Q6NT04 549 aaPredicted RBP12.98□□□□□ -0.33
USP53-209ENST00000514665 CCDC81Q6ZN84 652 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 SLC51AQ86UW1 340 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 TRABD2AQ86V40 505 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 PIWIL2Q8TC59 973 aaKnown RBP12.98□□□□□ -0.33
USP53-209ENST00000514665 FAR2Q96K12 515 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 GPBP1L1Q9HC44 474 aaPredicted RBP12.98□□□□□ -0.33
USP53-209ENST00000514665 PAPOLBQ9NRJ5 636 aaKnown RBP12.98□□□□□ -0.33
USP53-209ENST00000514665 TMEM161AQ9NX61 479 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 MRC1P22897 1456 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 HEATR9A2RTY3 570 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 SAC3D1A6NKF1 404 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 SLCO1B7G3V0H7 640 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 M0R3G1 203 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 TBC1D12O60347 775 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 PPP3CCP48454 512 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 SLC11A2P49281 568 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 TUBP50607 506 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 CDH18Q13634 790 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 CTXN3Q4LDR2 81 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 C9orf131Q5VYM1 1079 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 MAP1SQ66K74 1059 aaPredicted RBP12.98□□□□□ -0.33
USP53-209ENST00000514665 TTC30AQ86WT1 665 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 MICU2Q8IYU8 434 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 PRPF18Q99633 342 aaKnown RBP12.98□□□□□ -0.33
USP53-209ENST00000514665 PRDM12Q9H4Q4 367 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 ACSS3Q9H6R3 686 aa12.98□□□□□ -0.33
USP53-209ENST00000514665 SRRM3A6NNA2 597 aaPredicted RBP12.97□□□□□ -0.33
USP53-209ENST00000514665 GTF2A2P52657 109 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 VGLL4Q14135 290 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 SNX17Q15036 470 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 MIER2Q8N344 545 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 ZSCAN18Q8TBC5 510 aaPredicted RBP12.97□□□□□ -0.33
USP53-209ENST00000514665 BSNDQ8WZ55 320 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 LZICQ8WZA0 190 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 JADE3Q92613 823 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 CDCA5Q96FF9 252 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 MFSD14AQ96MC6 490 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 EXOSC4Q9NPD3 245 aaKnown RBP12.97□□□□□ -0.33
USP53-209ENST00000514665 HPS4Q9NQG7 708 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 ACTL7BQ9Y614 415 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 MROH7Q68CQ1 1323 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 CBX4O00257 560 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 TRDMT1O14717 391 aaKnown RBP12.97□□□□□ -0.33
USP53-209ENST00000514665 TPP1O14773 563 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 IRF6O14896 467 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 GLP2RO95838 553 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 CDH2P19022 906 aaPredicted RBP12.97□□□□□ -0.33
USP53-209ENST00000514665 MMP8P22894 467 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 UNC5AQ6ZN44 842 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 CATSPERGQ6ZRH7 1159 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 EFL1Q7Z2Z2 1120 aaKnown RBP12.97□□□□□ -0.33
USP53-209ENST00000514665 TMC7Q7Z402 723 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 DDX53Q86TM3 631 aaKnown RBP12.97□□□□□ -0.33
USP53-209ENST00000514665 LRRC39Q96DD0 335 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 LGMNQ99538 433 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 ACO2Q99798 780 aaKnown RBP12.97□□□□□ -0.33
USP53-209ENST00000514665 MECRQ9BV79 373 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 TKTL2Q9H0I9 626 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 GGA2Q9UJY4 613 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 TMEM191CA6NGB0 347 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 PLA2G6O60733 806 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 CST3P01034 146 aaPredicted RBP12.97□□□□□ -0.33
USP53-209ENST00000514665 ITGAVP06756 1048 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 RAG1P15918 1043 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 BDNFP23560 247 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 ALDH1A3P47895 512 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 PEX5P50542 639 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 ADCK1Q86TW2 530 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 PIGZQ86VD9 579 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 ZDHHC17Q8IUH5 632 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 EFCAB3Q8N7B9 438 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 GDPD5Q8WTR4 605 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 SPOCK2Q92563 424 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 C12orf65Q9H3J6 166 aaKnown RBP12.97□□□□□ -0.33
USP53-209ENST00000514665 RNPEPQ9H4A4 650 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 NRDE2Q9H7Z3 1164 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 LRRC4CQ9HCJ2 640 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 TBC1D23Q9NUY8 699 aa12.97□□□□□ -0.33
USP53-209ENST00000514665 ZNF212Q9UDV6 495 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms