RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 ELMO2Q96JJ3 720 aa11.53□□□□□ -0.56
TCOF1-211ENST00000513346 MRIQ9BWK5 157 aa11.53□□□□□ -0.56
TCOF1-211ENST00000513346 NT5C1AQ9BXI3 368 aa11.53□□□□□ -0.56
TCOF1-211ENST00000513346 CLK4Q9HAZ1 481 aaKnown RBP11.53□□□□□ -0.56
TCOF1-211ENST00000513346 SP110Q9HB58 689 aa11.53□□□□□ -0.56
TCOF1-211ENST00000513346 LRRC4CQ9HCJ2 640 aa11.53□□□□□ -0.56
TCOF1-211ENST00000513346 ETNK2Q9NVF9 386 aa11.53□□□□□ -0.56
TCOF1-211ENST00000513346 ARHGEF38Q9NXL2 777 aa11.53□□□□□ -0.56
TCOF1-211ENST00000513346 FMN2Q9NZ56 1722 aa11.52□□□□□ -0.56
TCOF1-211ENST00000513346 C3orf70A6NLC5 250 aaPredicted RBP11.52□□□□□ -0.56
TCOF1-211ENST00000513346 FAM86B1E9PN63 330 aa11.52□□□□□ -0.56
TCOF1-211ENST00000513346 FAM86B2P0C5J1 330 aa11.52□□□□□ -0.56
TCOF1-211ENST00000513346 ACAT1P24752 427 aaKnown RBP11.52□□□□□ -0.56
TCOF1-211ENST00000513346 MAPK10P53779 464 aa11.52□□□□□ -0.56
TCOF1-211ENST00000513346 BFSP2Q13515 415 aa11.52□□□□□ -0.56
TCOF1-211ENST00000513346 NDUFA5Q16718 116 aa11.52□□□□□ -0.56
TCOF1-211ENST00000513346 NOTUMQ6P988 496 aa11.52□□□□□ -0.56
TCOF1-211ENST00000513346 CAPSLQ8WWF8 208 aa11.52□□□□□ -0.56
TCOF1-211ENST00000513346 PDCD2LQ9BRP1 358 aa11.52□□□□□ -0.56
TCOF1-211ENST00000513346 DNAJB4Q9UDY4 337 aa11.52□□□□□ -0.56
TCOF1-211ENST00000513346 VTI1BQ9UEU0 232 aa11.52□□□□□ -0.56
TCOF1-211ENST00000513346 CROTQ9UKG9 612 aa11.52□□□□□ -0.56
TCOF1-211ENST00000513346 CNOT3O75175 753 aaKnown RBP11.52□□□□□ -0.57
TCOF1-211ENST00000513346 GLRA2P23416 452 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 HSD17B4P51659 736 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 RAB15P59190 212 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 RUNX1T1Q06455 604 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 NSUN2Q08J23 767 aaKnown RBP eCLIP11.52□□□□□ -0.57
TCOF1-211ENST00000513346 CDCA2Q69YH5 1023 aaPredicted RBP11.52□□□□□ -0.57
TCOF1-211ENST00000513346 ENDOVQ8N8Q3 282 aaKnown RBP11.52□□□□□ -0.57
TCOF1-211ENST00000513346 C10orf82Q8WW14 230 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 SGF29Q96ES7 293 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.52□□□□□ -0.57
TCOF1-211ENST00000513346 GCNT1Q02742 428 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 MGAT5Q09328 741 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 KCNA1Q09470 495 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 SPDYAQ5MJ70 313 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 C6orf10Q5SRN2 563 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 CYP2R1Q6VVX0 501 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 C15orf52Q6ZUT6 534 aaKnown RBP11.52□□□□□ -0.57
TCOF1-211ENST00000513346 FAM228AQ86W67 206 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 RBM12BQ8IXT5 1001 aaKnown RBP11.52□□□□□ -0.57
TCOF1-211ENST00000513346 EFCAB3Q8N7B9 438 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 SYTL5Q8TDW5 730 aaPredicted RBP11.52□□□□□ -0.57
TCOF1-211ENST00000513346 OSBPL6Q9BZF3 934 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 POLR1BQ9H9Y6 1135 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 FAM49BQ9NUQ9 324 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 DKK3Q9UBP4 350 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 TJP2Q9UDY2 1190 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 PRPF19Q9UMS4 504 aaKnown RBP11.52□□□□□ -0.57
TCOF1-211ENST00000513346 TBKBP1A7MCY6 615 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 H3BNX3 289 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 GOLGA8TH3BQL2 631 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 GRAP2O75791 330 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 ZMPSTE24O75844 475 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 KCNA2P16389 499 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 PPATQ06203 517 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 PDK1Q15118 436 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 DGUOKQ16854 277 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 GLRA4Q5JXX5 417 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 FAM117BQ6P1L5 589 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 PACS1Q6VY07 963 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 DNAJC1Q96KC8 554 aaKnown RBP11.52□□□□□ -0.57
TCOF1-211ENST00000513346 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.52□□□□□ -0.57
TCOF1-211ENST00000513346 PACSIN3Q9UKS6 424 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 SQORQ9Y6N5 450 aa11.52□□□□□ -0.57
TCOF1-211ENST00000513346 SLIT3O75094 1523 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 CCDC78A2IDD5 438 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 GLTPD2A6NH11 291 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 UBDO15205 165 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 PSMD3O43242 534 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 LSM8O95777 96 aaKnown RBP11.51□□□□□ -0.57
TCOF1-211ENST00000513346 SUPT20HL2P0C7V6 817 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 AMPD1P23109 780 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 CHRNB3Q05901 458 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 DPYSL3Q14195 570 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 PDK2Q15119 407 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 SAMD4BQ5PRF9 694 aaKnown RBP11.51□□□□□ -0.57
TCOF1-211ENST00000513346 P3H2Q8IVL5 708 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 REM2Q8IYK8 340 aaPredicted RBP11.51□□□□□ -0.57
TCOF1-211ENST00000513346 PPHLN1Q8NEY8 458 aaKnown RBP11.51□□□□□ -0.57
TCOF1-211ENST00000513346 KAT5Q92993 513 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 CDCA5Q96FF9 252 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 RUBCNLQ9H714 662 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 PCDHAC2Q9Y5I4 1007 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 PDE4DIPQ5VU43 2346 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 DLG5Q8TDM6 1919 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 ASTN1O14525 1302 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 TCRBV7S2A1N4TA0A589 114 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 TAF4O00268 1085 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 BIRC5O15392 142 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 ONECUT3O60422 494 aaPredicted RBP11.51□□□□□ -0.57
TCOF1-211ENST00000513346 TGM2P21980 687 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 PCSK1P29120 753 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 PTGER2P43116 358 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 MAGEA8P43361 318 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 CCR3P51677 355 aa11.51□□□□□ -0.57
TCOF1-211ENST00000513346 WDR4P57081 412 aaKnown RBP11.51□□□□□ -0.57
TCOF1-211ENST00000513346 GJC2Q5T442 439 aaPredicted RBP11.51□□□□□ -0.57
TCOF1-211ENST00000513346 C16orf46Q6P387 395 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms