RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 MED8Q96G25 268 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 CCT7Q99832 543 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 RAB21Q9UL25 225 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 DUSP10Q9Y6W6 482 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 MAGEB16A2A368 324 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 CYP3A4P08684 503 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 CDH17Q12864 832 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 PRKAA1Q13131 559 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 KHDRBS2Q5VWX1 349 aaKnown RBP13.46□□□□□ -0.25
PTPRF-215ENST00000496447 PLEKHM3Q6ZWE6 761 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 YTHDF3Q7Z739 585 aaKnown RBP13.46□□□□□ -0.25
PTPRF-215ENST00000496447 GALNT4Q8N4A0 578 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 ACTL9Q8TC94 416 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 NSL1Q96IY1 281 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 APBA2Q99767 749 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 RAD54BQ9Y620 910 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 CAPN6Q9Y6Q1 641 aa13.46□□□□□ -0.25
PTPRF-215ENST00000496447 CPSF4O95639 269 aaKnown RBP13.46□□□□□ -0.26
PTPRF-215ENST00000496447 ATP5BP06576 529 aaKnown RBP13.46□□□□□ -0.26
PTPRF-215ENST00000496447 CTNNB1P35222 781 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 KRT20P35900 424 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 CPA2P48052 419 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 CCL23P55773 120 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 NLRP9Q7RTR0 991 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 CCDC60Q8IWA6 550 aaPredicted RBP13.46□□□□□ -0.26
PTPRF-215ENST00000496447 EPS8L3Q8TE67 593 aaKnown RBP13.46□□□□□ -0.26
PTPRF-215ENST00000496447 SUSD6Q92537 303 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 UROC1Q96N76 676 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 PAFAH2Q99487 392 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 PORCNQ9H237 461 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 ADCY6O43306 1168 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 SLC6A3Q01959 620 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 BCL2L1Q07817 233 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 OVGP1Q12889 678 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 PWP1Q13610 501 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 TPGS1Q6ZTW0 290 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 PLD3Q8IV08 490 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 POPDC2Q9HBU9 364 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 SCN3BQ9NY72 215 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 PADI4Q9UM07 663 aa13.46□□□□□ -0.26
PTPRF-215ENST00000496447 SPATA31D1Q6ZQQ2 1576 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 ERI2A8K979 691 aaKnown RBP13.45□□□□□ -0.26
PTPRF-215ENST00000496447 GUCA1AP43080 201 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-215ENST00000496447 CCNG1P51959 295 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 TRIP10Q15642 601 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 VMP1Q96GC9 406 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 TDRKHQ9Y2W6 561 aaKnown RBP13.45□□□□□ -0.26
PTPRF-215ENST00000496447 DISP2A7MBM2 1401 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 RASSF9O75901 435 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 ZNF7P17097 686 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-215ENST00000496447 TNNI3P19429 210 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 NME5P56597 212 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 MGAT5Q09328 741 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 SLC26A11Q86WA9 606 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 SYTL1Q8IYJ3 562 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 FAM81AQ8TBF8 368 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 MRIQ9BWK5 157 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 UBA2Q9UBT2 640 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-215ENST00000496447 TPH1P17752 444 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 AMPD1P23109 780 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 UBE3AQ05086 875 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 BOP1Q14137 746 aaKnown RBP13.45□□□□□ -0.26
PTPRF-215ENST00000496447 DOK6Q6PKX4 331 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 ZNF557Q8N988 423 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-215ENST00000496447 ERLEC1Q96DZ1 483 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 C1QTNF7Q9BXJ2 289 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 NLNQ9BYT8 704 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 EXOSC4Q9NPD3 245 aaKnown RBP13.45□□□□□ -0.26
PTPRF-215ENST00000496447 GAKO14976 1311 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 TBC1D3BA6NDS4 549 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 LTFP02788 710 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 YBX3P16989 372 aaKnown RBP eCLIP13.45□□□□□ -0.269e-8■■■□□ 19.1
PTPRF-215ENST00000496447 SERPINB5P36952 375 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 CREMQ03060 361 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 RCN1Q15293 331 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 ADCK1Q86TW2 530 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 ACTRT1Q8TDG2 376 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 AHCYL2Q96HN2 611 aaKnown RBP13.45□□□□□ -0.26
PTPRF-215ENST00000496447 GANQ9H2C0 597 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 MIEF1Q9NQG6 463 aa13.45□□□□□ -0.26
PTPRF-215ENST00000496447 CCNT2O60583 730 aaKnown RBP13.44□□□□□ -0.26
PTPRF-215ENST00000496447 MTA2O94776 668 aa13.44□□□□□ -0.26
PTPRF-215ENST00000496447 TPBGLP0DKB5 382 aa13.44□□□□□ -0.26
PTPRF-215ENST00000496447 PSMA3P25788 255 aa13.44□□□□□ -0.26
PTPRF-215ENST00000496447 HIRAP54198 1017 aaPredicted RBP13.44□□□□□ -0.26
PTPRF-215ENST00000496447 GLT6D1Q7Z4J2 308 aa13.44□□□□□ -0.26
PTPRF-215ENST00000496447 VSIG10LQ86VR7 867 aa13.44□□□□□ -0.26
PTPRF-215ENST00000496447 KLHL23Q8NBE8 558 aa13.44□□□□□ -0.26
PTPRF-215ENST00000496447 PPP1R13LQ8WUF5 828 aa13.44□□□□□ -0.26
PTPRF-215ENST00000496447 ACOX2Q99424 681 aa13.44□□□□□ -0.26
PTPRF-215ENST00000496447 TMEM134Q9H6X4 195 aa13.44□□□□□ -0.26
PTPRF-215ENST00000496447 ABCC13Q9NSE7 274 aa13.44□□□□□ -0.26
PTPRF-215ENST00000496447 KIAA1210Q9ULL0 1709 aa13.44□□□□□ -0.26
PTPRF-215ENST00000496447 DYTNA2CJ06 578 aa13.44□□□□□ -0.26
PTPRF-215ENST00000496447 OR56A5P0C7T3 313 aa13.44□□□□□ -0.26
PTPRF-215ENST00000496447 PRKAR2AP13861 404 aaKnown RBP13.44□□□□□ -0.26
PTPRF-215ENST00000496447 CD151P48509 253 aa13.44□□□□□ -0.26
PTPRF-215ENST00000496447 CACNA2D1P54289 1103 aa13.44□□□□□ -0.26
PTPRF-215ENST00000496447 PLOD1Q02809 727 aaPredicted RBP13.44□□□□□ -0.26
PTPRF-215ENST00000496447 TRIM60Q495X7 471 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms