RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 EPB41L4BQ9H329 900 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 ZDHHC6Q9H6R6 413 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 BRD9Q9H8M2 597 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 GULP1Q9UBP9 304 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 A0A0B4J269 797 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 SCN2BO60939 215 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 FKTNO75072 461 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 IL1R1P14778 569 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 CHKAP35790 457 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 ATP5C1P36542 298 aaKnown RBP7.36□□□□□ -1.23
UPF2-203ENST00000397053 IFNGR2P38484 337 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 GPR1P46091 355 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 PSEN2P49810 448 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 FOXO4P98177 505 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 CRYMQ14894 314 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 SLC39A12Q504Y0 691 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 SEL1L3Q68CR1 1132 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 KRT73Q86Y46 540 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.36□□□□□ -1.23
UPF2-203ENST00000397053 LEMD2Q8NC56 503 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 NEK7Q8TDX7 302 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 MYOCQ99972 504 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 EPS8L2Q9H6S3 715 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 VIPAS39Q9H9C1 493 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 SEPT3Q9UH03 358 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 PAIP2BQ9ULR5 123 aaKnown RBP7.36□□□□□ -1.23
UPF2-203ENST00000397053 SPATA2Q9UM82 520 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 GPSM3Q9Y4H4 160 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 TRPV2Q9Y5S1 764 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 RFX7Q2KHR2 1363 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 SF3B1O75533 1304 aaKnown RBP eCLIP7.36□□□□□ -1.23
UPF2-203ENST00000397053 H7C0S8 307 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 SKIV2L2P42285 1042 aaKnown RBP7.36□□□□□ -1.23
UPF2-203ENST00000397053 MYL6P60660 151 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 GRIK3Q13003 919 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 MAD2L1Q13257 205 aaPredicted RBP7.36□□□□□ -1.23
UPF2-203ENST00000397053 LPIN1Q14693 890 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 SNAP47Q5SQN1 464 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 FAM46CQ5VWP2 391 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 KLHL35Q6PF15 583 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 FBXO33Q7Z6M2 555 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 LZTR1Q8N653 840 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 EFCAB3Q8N7B9 438 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 METTL6Q8TCB7 284 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 PDCD2LQ9BRP1 358 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 ROPN1BQ9BZX4 212 aaPredicted RBP7.36□□□□□ -1.23
UPF2-203ENST00000397053 ROPN1Q9HAT0 212 aaPredicted RBP7.36□□□□□ -1.23
UPF2-203ENST00000397053 POLE3Q9NRF9 147 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 MARCH2Q9P0N8 246 aa7.36□□□□□ -1.23
UPF2-203ENST00000397053 NFASCO94856 1347 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 USP42Q9H9J4 1324 aaKnown RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 SEC22BO75396 215 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 MTRF1O75570 445 aaKnown RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 CD151P48509 253 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 C2CD6Q53TS8 623 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 ARMCX4Q5H9R4 360 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 KLHDC7AQ5VTJ3 777 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 LLGL2Q6P1M3 1020 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 C16orf59Q7L2K0 433 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 FBXO39Q8N4B4 442 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 DNERQ8NFT8 737 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 PROX1Q92786 737 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 ERP44Q9BS26 406 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 KIFC1Q9BW19 673 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 FRMD8P1Q9BZ68 369 aaPredicted RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 EPC1Q9H2F5 836 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 CISHQ9NSE2 258 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 AGPAT5Q9NUQ2 364 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 ALKBH4Q9NXW9 302 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 SUCOQ9UBS9 1254 aaKnown RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 TAF6LQ9Y6J9 622 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 SPATA31A1Q5TZJ5 1347 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 MYPNQ86TC9 1320 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 URADA6NGE7 173 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 ISM1B1AKI9 464 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 SLC25A12O75746 678 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 OR6B1O95007 311 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 DLGAP3O95886 979 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 CYP11B1P15538 503 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 EXOSC10Q01780 885 aaKnown RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 IRF8Q02556 426 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 LAMTOR4Q0VGL1 99 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 NFIAQ12857 509 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 INAQ16352 499 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 CXCL17Q6UXB2 119 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 LRRC74BQ6ZQY2 392 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 GLT6D1Q7Z4J2 308 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 EMC1Q8N766 993 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 C19orf18Q8NEA5 215 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 RERGQ96A58 199 aaPredicted RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 PLA2G12BQ9BX93 195 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 RACGAP1Q9H0H5 632 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 ARL15Q9NXU5 204 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 VAV3Q9UKW4 847 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 DUSP12Q9UNI6 340 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 MRPS33Q9Y291 106 aaKnown RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 ARIH1Q9Y4X5 557 aaPredicted RBP7.35□□□□□ -1.23
UPF2-203ENST00000397053 SNX13Q9Y5W8 968 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 TM9SF1O15321 606 aa7.35□□□□□ -1.23
UPF2-203ENST00000397053 MGRN1O60291 552 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms