RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 RPL7AP62424 266 aaKnown RBP10.58□□□□□ -0.72
VPS53-202ENST00000389040 LLGL1Q15334 1064 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 SPDYCQ5MJ68 293 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 CEP85LQ5SZL2 805 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 GPR158Q5T848 1215 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 GPRIN1Q7Z2K8 1008 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 CCDC50Q8IVM0 306 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 CELF5Q8N6W0 485 aaKnown RBP10.58□□□□□ -0.72
VPS53-202ENST00000389040 ELSPBP1Q96BH3 223 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 MYADMQ96S97 322 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 SLC46A2Q9BY10 475 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 TXLNGYQ9BZA5 131 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 SYNCQ9H7C4 482 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 ZFP14Q9HCL3 533 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 RRN3Q9NYV6 651 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 PRDM4Q9UKN5 801 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 ARHGAP26Q9UNA1 814 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 NFS1Q9Y697 457 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 TULP2O00295 520 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 SHOX2O60902 331 aaPredicted RBP10.58□□□□□ -0.72
VPS53-202ENST00000389040 LCP1P13796 627 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 ACTN2P35609 894 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 ATP5C1P36542 298 aaKnown RBP10.58□□□□□ -0.72
VPS53-202ENST00000389040 SSR1P43307 286 aaKnown RBP10.58□□□□□ -0.72
VPS53-202ENST00000389040 KCNJ1P48048 391 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 CDR1P51861 262 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 YWHAGP61981 247 aaKnown RBP eCLIP10.58□□□□□ -0.72
VPS53-202ENST00000389040 YWHAZP63104 245 aaKnown RBP10.58□□□□□ -0.72
VPS53-202ENST00000389040 ZNF844Q08AG5 666 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 MTA1Q13330 715 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 PPP1R7Q15435 360 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 PPP1R15BQ5SWA1 713 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 KCTD16Q68DU8 428 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 DCUN1D2Q6PH85 259 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 LEKR1Q6ZMV7 388 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 EXD1Q8NHP7 514 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 ZSCAN18Q8TBC5 510 aaPredicted RBP10.58□□□□□ -0.72
VPS53-202ENST00000389040 FBXO25Q8TCJ0 367 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 DEPDC1BQ8WUY9 529 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 C1orf54Q8WWF1 131 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 ATP6V1G3Q96LB4 118 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 MCEEQ96PE7 176 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 HERPUD2Q9BSE4 406 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 ULBP1Q9BZM6 244 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 TDP1Q9NUW8 608 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.58□□□□□ -0.72
VPS53-202ENST00000389040 GMIPQ9P107 970 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 DNMT3LQ9UJW3 386 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 HMGB1P1B2RPK0 211 aaPredicted RBP10.57□□□□□ -0.72
VPS53-202ENST00000389040 C2CD4DB7Z1M9 353 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 E5RJQ4 531 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 MYZAPP0CAP1 466 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 COG7P83436 770 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 ZNF252P-AS1Q0IIN9 211 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 KLF1Q13351 362 aaPredicted RBP10.57□□□□□ -0.72
VPS53-202ENST00000389040 FAM78AQ5JUQ0 283 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 BSPRYQ5W0U4 402 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 BTBD8Q5XKL5 378 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 TXNDC8Q6A555 127 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 SLC26A9Q7LBE3 791 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 ARID3BQ8IVW6 561 aaPredicted RBP10.57□□□□□ -0.72
VPS53-202ENST00000389040 SCUBE3Q8IX30 993 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 GJD3Q8N144 294 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 SH2D3CQ8N5H7 860 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 MAB21L3Q8N8X9 362 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 C3orf20Q8ND61 904 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 OR2W6PQ8NHA6 318 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 MCRS1Q96EZ8 462 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 CPXM1Q96SM3 734 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 FAM129AQ9BZQ8 928 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 DCLK3Q9C098 648 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 POPDC2Q9HBU9 364 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 TMBIM4Q9HC24 238 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 HOMER3Q9NSC5 361 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 THG1LQ9NWX6 298 aaKnown RBP10.57□□□□□ -0.72
VPS53-202ENST00000389040 MTRF1LQ9UGC7 380 aaKnown RBP10.57□□□□□ -0.72
VPS53-202ENST00000389040 CYTH4Q9UIA0 394 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 ATP8A1Q9Y2Q0 1164 aa10.57□□□□□ -0.72
VPS53-202ENST00000389040 DPYSL4O14531 572 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 PAPSS1O43252 624 aaPredicted RBP10.56□□□□□ -0.72
VPS53-202ENST00000389040 TLR5O60602 858 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 LTFP02788 710 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 RARGP13631 454 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 GJC1P36383 396 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 RGS7P49802 495 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 SLC6A3Q01959 620 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 IFRD2Q12894 506 aaPredicted RBP10.56□□□□□ -0.72
VPS53-202ENST00000389040 SNX1Q13596 522 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 HTR4Q13639 388 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 PTPN20Q4JDL3 420 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 LRRC38Q5VT99 294 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 SYDE1Q6ZW31 735 aaPredicted RBP10.56□□□□□ -0.72
VPS53-202ENST00000389040 SCD5Q86SK9 330 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 MFSD6LQ8IWD5 586 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 GRK7Q8WTQ7 553 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 RNF139Q8WU17 664 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 ATG4AQ8WYN0 398 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 ART4Q93070 314 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 ZSWIM3Q96MP5 696 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 HEMGNQ9BXL5 484 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms