RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 ANKRD49Q8WVL7 239 aa18.45■□□□□ 0.54
COL18A1-202ENST00000355480 NDOR1Q9UHB4 597 aa18.45■□□□□ 0.54
COL18A1-202ENST00000355480 KPNA3O00505 521 aaPredicted RBP18.44■□□□□ 0.54
COL18A1-202ENST00000355480 SERPINB3P29508 390 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 LZTR1Q8N653 840 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 KIAA0895Q8NCT3 520 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 ERLEC1Q96DZ1 483 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 LACRTQ9GZZ8 138 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 TMBIM4Q9HC24 238 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 CYP2A6P11509 494 aaPredicted RBP18.44■□□□□ 0.54
COL18A1-202ENST00000355480 BDNFP23560 247 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 CEP78Q5JTW2 689 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 NECAB2Q7Z6G3 386 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 BRSK2Q8IWQ3 736 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 ADAM2Q99965 735 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 KCTD14Q9BQ13 255 aaPredicted RBP18.44■□□□□ 0.54
COL18A1-202ENST00000355480 PRKD2Q9BZL6 878 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 SEPT3Q9UH03 358 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 YBX3P16989 372 aaKnown RBP eCLIP18.44■□□□□ 0.541e-6■□□□□ 10.4
COL18A1-202ENST00000355480 BCL2L1Q07817 233 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 FZD1Q9UP38 647 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.44■□□□□ 0.541e-6■■■■□ 26.2
COL18A1-202ENST00000355480 TM9SF1O15321 606 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 CCT8P50990 548 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 FBXO39Q8N4B4 442 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 ATG16L2Q8NAA4 619 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 PRRG3Q9BZD7 231 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 ARMC7Q9H6L4 198 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 TRHDEQ9UKU6 1024 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 UMODL1Q5DID0 1318 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 MGAT1P26572 445 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 HIRAP54198 1017 aaPredicted RBP18.44■□□□□ 0.54
COL18A1-202ENST00000355480 VAC14Q08AM6 782 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 IQSEC1Q6DN90 963 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 ZCCHC8Q6NZY4 707 aaKnown RBP18.44■□□□□ 0.54
COL18A1-202ENST00000355480 DEPDC7Q96QD5 511 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 DCLK3Q9C098 648 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 TAGLN3Q9UI15 199 aa18.44■□□□□ 0.54
COL18A1-202ENST00000355480 TRIM66O15016 1216 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 USP17L7P0C7H9 530 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 GRTP1Q5TC63 336 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 PAPD7Q5XG87 772 aaKnown RBP18.43■□□□□ 0.54
COL18A1-202ENST00000355480 TAS2R13Q9NYV9 303 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 HOXC6P09630 235 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 ELK3P41970 407 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 ITIH4Q14624 930 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 BATF3Q9NR55 127 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 TCRBV5S4A2TA0A5A2 114 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 PYGMP11217 842 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 SKIV2L2P42285 1042 aaKnown RBP18.43■□□□□ 0.54
COL18A1-202ENST00000355480 GCNT1Q02742 428 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 RASA2Q15283 850 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 NTRK3Q16288 839 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 SHROOM1Q2M3G4 852 aaPredicted RBP18.43■□□□□ 0.54
COL18A1-202ENST00000355480 N4BP2L1Q5TBK1 243 aaPredicted RBP18.43■□□□□ 0.54
COL18A1-202ENST00000355480 OLFML2BQ68BL8 750 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 ZNF470Q6ECI4 717 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 MTDHQ86UE4 582 aaKnown RBP18.43■□□□□ 0.54
COL18A1-202ENST00000355480 VPS33AQ96AX1 596 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 SKA1Q96BD8 255 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 AHCYL2Q96HN2 611 aaKnown RBP18.43■□□□□ 0.54
COL18A1-202ENST00000355480 ZBTB45Q96K62 511 aaPredicted RBP18.43■□□□□ 0.54
COL18A1-202ENST00000355480 TBL1YQ9BQ87 522 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 DLGAP2Q9P1A6 1054 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 UBA2Q9UBT2 640 aaPredicted RBP18.43■□□□□ 0.54
COL18A1-202ENST00000355480 BMP10O95393 424 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 PAEPP09466 180 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 PGAM1P18669 254 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 SLC6A3Q01959 620 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 NCF4Q15080 339 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 HLA-DQA1Q5Y7H0 255 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 CDK20Q8IZL9 346 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 MCOLN3Q8TDD5 553 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 PPP1R14AQ96A00 147 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 MTERF3Q96E29 417 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 PTPRHQ9HD43 1115 aa18.43■□□□□ 0.54
COL18A1-202ENST00000355480 DDX4Q9NQI0 724 aaKnown RBP18.43■□□□□ 0.54
COL18A1-202ENST00000355480 LGALS2P05162 132 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 SERPINB1P30740 379 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 PPIL2Q13356 520 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 DPP10Q8N608 796 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 MRPL48Q96GC5 212 aaKnown RBP18.42■□□□□ 0.54
COL18A1-202ENST00000355480 MROH7Q68CQ1 1323 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 MTA2O94776 668 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 NR2C2P49116 596 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 NPY2RP49146 381 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 IKBKEQ14164 716 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 KLHL20Q9Y2M5 609 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 TNS2Q63HR2 1409 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 A8MX80 341 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 KCNK1O00180 336 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 WBP4O75554 376 aaKnown RBP18.42■□□□□ 0.54
COL18A1-202ENST00000355480 VAPBO95292 243 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 CLTBP09497 229 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 POLR2EP19388 210 aaKnown RBP18.42■□□□□ 0.54
COL18A1-202ENST00000355480 GP5P40197 560 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 APBB2Q92870 758 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 GAD1Q99259 594 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 TKTL2Q9H0I9 626 aa18.42■□□□□ 0.54
COL18A1-202ENST00000355480 SHOC2Q9UQ13 582 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms