RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 PRR23AA6NEV1 266 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 YJEFN3A6XGL0 299 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 E7ENQ6 273 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 RNF225M0QZC1 329 aaPredicted RBP9.02□□□□□ -0.97
USP3-208ENST00000558285 GFRA2O00451 464 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 AXIN1O15169 862 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 TULP3O75386 442 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 RHOBTB1O94844 696 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 SCNN1AP37088 669 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 OPRD1P41143 372 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 RPL34P49207 117 aaKnown RBP9.02□□□□□ -0.97
USP3-208ENST00000558285 ZNF165P49910 485 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 COPB1P53618 953 aaKnown RBP9.02□□□□□ -0.97
USP3-208ENST00000558285 SATB1Q01826 763 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 KDSRQ06136 332 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 FZD5Q13467 585 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 MIIPQ5JXC2 388 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 MPP7Q5T2T1 576 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 TTC39BQ5VTQ0 682 aaPredicted RBP9.02□□□□□ -0.97
USP3-208ENST00000558285 Q6ZNB5 142 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 ANKS1BQ7Z6G8 1248 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 ERICH1Q86X53 443 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 SCUBE3Q8IX30 993 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 ZNF513Q8N8E2 541 aaPredicted RBP9.02□□□□□ -0.97
USP3-208ENST00000558285 HJURPQ8NCD3 748 aaPredicted RBP9.02□□□□□ -0.97
USP3-208ENST00000558285 KIAA1524Q8TCG1 905 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 USP33Q8TEY7 942 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 EDEM1Q92611 657 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 NELL1Q92832 810 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 CHFRQ96EP1 664 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 TMA16Q96EY4 203 aaKnown RBP9.02□□□□□ -0.97
USP3-208ENST00000558285 LOXL4Q96JB6 756 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 EPC1Q9H2F5 836 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.02□□□□□ -0.97
USP3-208ENST00000558285 OSER1Q9NX31 292 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 EBF1Q9UH73 591 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 MMP17Q9ULZ9 603 aa9.02□□□□□ -0.97
USP3-208ENST00000558285 GREB1Q4ZG55 1949 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 OBSL1O75147 1896 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 OTOL1A6NHN0 477 aaPredicted RBP9.01□□□□□ -0.97
USP3-208ENST00000558285 F8VZ95 297 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 FOXN3O00409 490 aaPredicted RBP9.01□□□□□ -0.97
USP3-208ENST00000558285 SYNCRIPO60506 623 aaKnown RBP9.01□□□□□ -0.97
USP3-208ENST00000558285 LILRB5O75023 590 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 LRP3O75074 770 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 RPP40O75818 363 aaKnown RBP9.01□□□□□ -0.97
USP3-208ENST00000558285 SERPINC1P01008 464 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 ATP5BP06576 529 aaKnown RBP9.01□□□□□ -0.97
USP3-208ENST00000558285 CYP11B1P15538 503 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 NTSR1P30989 418 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 CCR1P32246 355 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 SOX5P35711 763 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 POLR2FP61218 127 aaKnown RBP9.01□□□□□ -0.97
USP3-208ENST00000558285 ANO6Q4KMQ2 910 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 C2orf27AQ580R0 203 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 RABGAP1LQ5R372 815 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 OR6B2Q6IFH4 312 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 DENND1BQ6P3S1 775 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 PRR23BQ6ZRT6 265 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 Q6ZS52 159 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 TMEM25Q86YD3 366 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 CHPFQ8IZ52 775 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 PGBD3Q8N328 593 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 AOPEPQ8N6M6 819 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 ZNF397Q8NF99 534 aaPredicted RBP9.01□□□□□ -0.97
USP3-208ENST00000558285 C18orf8Q96DM3 657 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 NUCKS1Q9H1E3 243 aaKnown RBP9.01□□□□□ -0.97
USP3-208ENST00000558285 FAM207AQ9NSI2 230 aaPredicted RBP9.01□□□□□ -0.97
USP3-208ENST00000558285 TMEM63CQ9P1W3 806 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 NUDT5Q9UKK9 219 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 AGO1Q9UL18 857 aaKnown RBP9.01□□□□□ -0.97
USP3-208ENST00000558285 MYO6Q9UM54 1294 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 PLA2G4CQ9UP65 541 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 SMG5Q9UPR3 1016 aaKnown RBP9.01□□□□□ -0.97
USP3-208ENST00000558285 SLC27A6Q9Y2P4 619 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 STARD13Q9Y3M8 1113 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 R4GN57 208 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 PATJQ8NI35 1801 aa9.01□□□□□ -0.97
USP3-208ENST00000558285 HELZP42694 1942 aaKnown RBP9□□□□□ -0.97
USP3-208ENST00000558285 SYCE3A1L190 88 aa9□□□□□ -0.97
USP3-208ENST00000558285 LRRC10BA6NIK2 292 aa9□□□□□ -0.97
USP3-208ENST00000558285 E5RJQ4 531 aa9□□□□□ -0.97
USP3-208ENST00000558285 MDM4O15151 490 aa9□□□□□ -0.97
USP3-208ENST00000558285 ZNF217O75362 1048 aa9□□□□□ -0.97
USP3-208ENST00000558285 KLF8O95600 359 aaPredicted RBP9□□□□□ -0.97
USP3-208ENST00000558285 FERP16591 822 aa9□□□□□ -0.97
USP3-208ENST00000558285 SEC13P55735 322 aa9□□□□□ -0.97
USP3-208ENST00000558285 ZXDBP98169 803 aa9□□□□□ -0.97
USP3-208ENST00000558285 DCAF6Q58WW2 860 aa9□□□□□ -0.97
USP3-208ENST00000558285 HEATR6Q6AI08 1181 aaKnown RBP9□□□□□ -0.97
USP3-208ENST00000558285 VPS36Q86VN1 386 aa9□□□□□ -0.97
USP3-208ENST00000558285 ETFBKMTQ8IXQ9 262 aa9□□□□□ -0.97
USP3-208ENST00000558285 NAT16Q8N8M0 369 aa9□□□□□ -0.97
USP3-208ENST00000558285 KIF18AQ8NI77 898 aa9□□□□□ -0.97
USP3-208ENST00000558285 RIN3Q8TB24 985 aa9□□□□□ -0.97
USP3-208ENST00000558285 GAB3Q8WWW8 586 aa9□□□□□ -0.97
USP3-208ENST00000558285 BTN2A3PQ96KV6 586 aa9□□□□□ -0.97
USP3-208ENST00000558285 ERGIC2Q96RQ1 377 aa9□□□□□ -0.97
USP3-208ENST00000558285 NUP58Q9BVL2 599 aa9□□□□□ -0.97
USP3-208ENST00000558285 FBRSQ9HAH7 460 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms