RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 FESP07332 822 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 CXCL8P10145 99 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 MIPP30301 263 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 STIP1P31948 543 aaKnown RBP5.12□□□□□ -1.59
SYNE2-223ENST00000557005 RGS2P41220 211 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 PTGER2P43116 358 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 EFNA5P52803 228 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 TAF5Q15542 800 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 GK5Q6ZS86 529 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 SETD3Q86TU7 594 aaPredicted RBP5.12□□□□□ -1.59
SYNE2-223ENST00000557005 KCNMB4Q86W47 210 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 HORMAD1Q86X24 394 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 DHFR2Q86XF0 187 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 MYO1HQ8N1T3 1032 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 PANX3Q96QZ0 392 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 SEPHS2Q99611 448 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 VPS33BQ9H267 617 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 DNAJC28Q9NX36 388 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 SLC17A6Q9P2U8 582 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 ZNF180Q9UJW8 692 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 ATP11BQ9Y2G3 1177 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 PPME1Q9Y570 386 aa5.12□□□□□ -1.59
SYNE2-223ENST00000557005 CAMTA1Q9Y6Y1 1673 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 TCRBV9S1A1TA0A576 114 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 CAPN8A6NHC0 703 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 C3orf70A6NLC5 250 aaPredicted RBP5.11□□□□□ -1.59
SYNE2-223ENST00000557005 LTFP02788 710 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 CD48P09326 243 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 GARTP22102 1010 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 NFKBIAP25963 317 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 SERPINB1P30740 379 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 CDK7P50613 346 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 CDH8P55286 799 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 USP46P62068 366 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 RBP5P82980 135 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 PRAMEF18Q5VWM3 479 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 C11orf74Q86VG3 221 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 CCNJLQ8IV13 435 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 NLGN1Q8N2Q7 840 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 MAB21L3Q8N8X9 362 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 OR6P1Q8NGX9 317 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 ZNF606Q8WXB4 792 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 LZICQ8WZA0 190 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 NT5C1AQ9BXI3 368 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 NSMCE4AQ9NXX6 385 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.11□□□□□ -1.59
SYNE2-223ENST00000557005 TCRBV7S3A2A0A539 114 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 NR3C2P08235 984 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 CYP3A4P08684 503 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 TCF4P15884 667 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 IDH3AP50213 366 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 TUBP50607 506 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 DCTN2Q13561 401 aaKnown RBP5.11□□□□□ -1.59
SYNE2-223ENST00000557005 ZNF268Q14587 947 aaPredicted RBP5.11□□□□□ -1.59
SYNE2-223ENST00000557005 ACSBG2Q5FVE4 666 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 GLRA4Q5JXX5 417 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 TMTC4Q5T4D3 741 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 GPR107Q5VW38 600 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 MAP4K3Q8IVH8 894 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 TNS4Q8IZW8 715 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 TNIP2Q8NFZ5 429 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 RNF139Q8WU17 664 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 AFG1LQ8WV93 481 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 VPS39Q96JC1 886 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 CRAMP1Q96RY5 1269 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 SPATA16Q9BXB7 569 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 DNAAF2Q9NVR5 837 aaKnown RBP5.11□□□□□ -1.59
SYNE2-223ENST00000557005 RBMX2Q9Y388 322 aaKnown RBP5.11□□□□□ -1.59
SYNE2-223ENST00000557005 C16orf96A6NNT2 1141 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 ABLIM1O14639 778 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 VTNP04004 478 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 KRT8P05787 483 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 SUPT20HL2P0C7V6 817 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 STAG3L1P0CL83 205 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 PIK3R1P27986 724 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 PPARGP37231 505 aaPredicted RBP5.11□□□□□ -1.59
SYNE2-223ENST00000557005 NAMPTP43490 491 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 GABRB2P47870 512 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 SPP2Q13103 211 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 SUPT20HL1Q3ZLR7 823 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 TRIM60Q495X7 471 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 SGO1Q5FBB7 561 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 TRAF7Q6Q0C0 670 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.11□□□□□ -1.59
SYNE2-223ENST00000557005 TTC7BQ86TV6 843 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 CCDC117Q8IWD4 279 aaPredicted RBP5.11□□□□□ -1.59
SYNE2-223ENST00000557005 KCTD17Q8N5Z5 321 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.11□□□□□ -1.59
SYNE2-223ENST00000557005 FIG4Q92562 907 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 RCN3Q96D15 328 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 EGFL8Q99944 293 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 GPR88Q9GZN0 384 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 NOL6Q9H6R4 1146 aaKnown RBP5.11□□□□□ -1.59
SYNE2-223ENST00000557005 CHST12Q9NRB3 414 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 KLK14Q9P0G3 267 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 TMEM114B3SHH9 223 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 M0QYT0 321 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 UBDO15205 165 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 ITM2AO43736 263 aa5.11□□□□□ -1.59
SYNE2-223ENST00000557005 PSMB4P28070 264 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms