RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 NDC80O14777 642 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 ADCY6O43306 1168 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 HMGCRP04035 888 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 RGS7P49802 495 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 XIAPP98170 497 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 TMEM62Q0P6H9 643 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 DNAL1Q4LDG9 190 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 MAP3K21Q5TCX8 1036 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 C9orf131Q5VYM1 1079 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 OR6Y1Q8NGX8 325 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 RXFP2Q8WXD0 754 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 NMD3Q96D46 503 aaKnown RBP12.65□□□□□ -0.38
SHMT2-207ENST00000553837 ZMAT2Q96NC0 199 aaKnown RBP12.65□□□□□ -0.38
SHMT2-207ENST00000553837 PANX3Q96QZ0 392 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 CORO1BQ9BR76 489 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 CALN1Q9BXU9 219 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 RABGEF1Q9UJ41 708 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 GJD2Q9UKL4 321 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 TSPAN16Q9UKR8 245 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 SCN1AP35498 2009 aa12.65□□□□□ -0.38
SHMT2-207ENST00000553837 HCRTO43612 131 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 ENDOD1O94919 500 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 UQCRBP14927 111 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 YBX3P16989 372 aaKnown RBP eCLIP12.64□□□□□ -0.397e-8■□□□□ 9
SHMT2-207ENST00000553837 ZNF143P52747 638 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-207ENST00000553837 ARL4CP56559 192 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 EIF3EP60228 445 aaKnown RBP12.64□□□□□ -0.39
SHMT2-207ENST00000553837 RPL26P61254 145 aaKnown RBP12.64□□□□□ -0.39
SHMT2-207ENST00000553837 BTG3Q14201 252 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-207ENST00000553837 HIF1AQ16665 826 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 EFHC2Q5JST6 749 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 LDLRAD1Q5T700 205 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 C1orf146Q5VVC0 180 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 B3GNT6Q6ZMB0 384 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 CENPUQ71F23 418 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 IGDCC3Q8IVU1 814 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 ULK2Q8IYT8 1036 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 SDR16C5Q8N3Y7 309 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 PRR11Q96HE9 360 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-207ENST00000553837 MRPL45Q9BRJ2 306 aaKnown RBP12.64□□□□□ -0.39
SHMT2-207ENST00000553837 CDHR5Q9HBB8 845 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.64□□□□□ -0.39
SHMT2-207ENST00000553837 RHBDL2Q9NX52 303 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-207ENST00000553837 CHMP2BQ9UQN3 213 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 SH3GLB1Q9Y371 365 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 PLXNB2O15031 1838 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 SPECC1L-ADORA2AF8WAN1 911 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 H3BRB1 525 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 H3BRJ5 948 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 BUD23O43709 281 aaKnown RBP12.64□□□□□ -0.39
SHMT2-207ENST00000553837 IL1BP01584 269 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 MYL2P10916 166 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 PHBP35232 272 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 HPCAP84074 193 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 SNAPC2Q13487 334 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 PRKD1Q15139 912 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-207ENST00000553837 CDO1Q16878 200 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 SYCP2LQ5T4T6 812 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 PPP1R26Q5T8A7 1209 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-207ENST00000553837 OR6B2Q6IFH4 312 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 PMF1Q6P1K2 205 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 LCLAT1Q6UWP7 414 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 SATL1Q86VE3 508 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 TTC30AQ86WT1 665 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 PPIL6Q8IXY8 311 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 BANPQ8N9N5 519 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 GPRC5AQ8NFJ5 357 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 LRRN4Q8WUT4 740 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 RSAD2Q8WXG1 361 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 KHSRPQ92945 711 aaKnown RBP eCLIP12.64□□□□□ -0.39
SHMT2-207ENST00000553837 MTBPQ96DY7 904 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 KIF12Q96FN5 646 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 ACAP3Q96P50 834 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 CYTH2Q99418 400 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 TUT1Q9H6E5 874 aaKnown RBP12.64□□□□□ -0.39
SHMT2-207ENST00000553837 GBA2Q9HCG7 927 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-207ENST00000553837 ARHGEF4Q9NR80 690 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 GPATCH2LQ9NWQ4 482 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 CLIC5Q9NZA1 410 aa12.64□□□□□ -0.39
SHMT2-207ENST00000553837 CITO14578 2027 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 APOC4-APOC2K7ER74 178 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 APOC2P02655 101 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 RBP3P10745 1247 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 PDGFRAP16234 1089 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 SMPD1P17405 629 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 GPD1P21695 349 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 IL4RP24394 825 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 HOXA11P31270 313 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-207ENST00000553837 EPHX2P34913 555 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 CDH6P55285 790 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 RBP5P82980 135 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 DPYSL3Q14195 570 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 GRIK4Q16099 956 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 KIZQ2M2Z5 673 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 GOLGA7BQ2TAP0 167 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 CCDC14Q49A88 953 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 ADGRD1Q6QNK2 874 aa12.63□□□□□ -0.39
SHMT2-207ENST00000553837 KYAT3Q6YP21 454 aaKnown RBP12.63□□□□□ -0.39
SHMT2-207ENST00000553837 NCCRP1Q6ZVX7 275 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms