RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 TWNKQ96RR1 684 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 NAT9Q9BTE0 207 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 PCDH18Q9HCL0 1135 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 NT5MQ9NPB1 228 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 SNCAIPQ9Y6H5 919 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 A0A096LPK6 155 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 MTSS1O43312 755 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 MSCO60682 206 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 HSPA8P11142 646 aaKnown RBP16.11■□□□□ 0.17
CUX1-211ENST00000546411 PTPN1P18031 435 aaKnown RBP16.11■□□□□ 0.17
CUX1-211ENST00000546411 CALB2P22676 271 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 PPIL2Q13356 520 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 CSHL1Q14406 222 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 C1orf220Q5T0J3 134 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 PTAR1Q7Z6K3 402 aaPredicted RBP16.11■□□□□ 0.17
CUX1-211ENST00000546411 ZCWPW1Q9H0M4 648 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 ZFYVE28Q9HCC9 887 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 TRPC7Q9HCX4 862 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 DCDC2Q9UHG0 476 aa16.11■□□□□ 0.17
CUX1-211ENST00000546411 HADHBP55084 474 aaKnown RBP16.1■□□□□ 0.17
CUX1-211ENST00000546411 PLIN5Q00G26 463 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 CNGA3Q16281 694 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 ZC3H3Q8IXZ2 948 aaKnown RBP16.1■□□□□ 0.17
CUX1-211ENST00000546411 RAET1EQ8TD07 263 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 SDCCAG3Q96C92 435 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 PHF21BQ96EK2 531 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 TSPYL2Q9H2G4 693 aaPredicted RBP16.1■□□□□ 0.17
CUX1-211ENST00000546411 PRDM5Q9NQX1 630 aaPredicted RBP16.1■□□□□ 0.17
CUX1-211ENST00000546411 BAG5Q9UL15 447 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 V9GYQ6 96 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 DCXO43602 365 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 CILPO75339 1184 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 UNC5CO95185 931 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 ATXN8OSP0DMR3 200 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 PSEN2P49810 448 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 GAD2Q05329 585 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 OVOS1Q6IE37 1185 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 TNS4Q8IZW8 715 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 B3GALNT2Q8NCR0 500 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 F9P00740 461 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 SMIM10L2AP0DMW4 78 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 SMIM10L2BP0DMW5 78 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 ZNF280AP59817 542 aaPredicted RBP16.1■□□□□ 0.17
CUX1-211ENST00000546411 SLC10A6Q3KNW5 377 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 TSHZ1Q6ZSZ6 1077 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 EP400NLQ6ZTU2 488 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 ZNF410Q86VK4 478 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 FBXL18Q96ME1 805 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 EIF2AQ9BY44 585 aaKnown RBP16.1■□□□□ 0.17
CUX1-211ENST00000546411 DCLRE1BQ9H816 532 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 NWD2Q9ULI1 1742 aa16.1■□□□□ 0.17
CUX1-211ENST00000546411 ZMPSTE24O75844 475 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 DNAJC8O75937 253 aaPredicted RBP16.09■□□□□ 0.17
CUX1-211ENST00000546411 MTA2O94776 668 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 SEC24DO94855 1032 aaPredicted RBP16.09■□□□□ 0.17
CUX1-211ENST00000546411 GP5P40197 560 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 SLC1A6P48664 564 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 SCAMP3O14828 347 aaKnown RBP16.09■□□□□ 0.17
CUX1-211ENST00000546411 GSTA4O15217 222 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 BUD23O43709 281 aaKnown RBP16.09■□□□□ 0.17
CUX1-211ENST00000546411 LTFP02788 710 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 IL1R2P27930 398 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 RGS2P41220 211 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 CSE1LP55060 971 aaKnown RBP16.09■□□□□ 0.17
CUX1-211ENST00000546411 NCALDP61601 193 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 MED21Q13503 144 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 MFSD5Q6N075 450 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 PYROXD2Q8N2H3 581 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 EFCAB3Q8N7B9 438 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 TRIM62Q9BVG3 475 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 OR12D3Q9UGF7 316 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 PPME1Q9Y570 386 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 ADGRA2Q96PE1 1338 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 TPP1O14773 563 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 VHLP40337 213 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 TCHHL1Q5QJ38 904 aaPredicted RBP16.09■□□□□ 0.17
CUX1-211ENST00000546411 NAF1Q96HR8 494 aaKnown RBP16.09■□□□□ 0.17
CUX1-211ENST00000546411 MAN1C1Q9NR34 630 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 CACNG4Q9UBN1 327 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 CDYLQ9Y232 598 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 ACOT9Q9Y305 439 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 C2CD2Q9Y426 696 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 COL18A1P39060 1754 aa16.09■□□□□ 0.17
CUX1-211ENST00000546411 NDUFS3O75489 264 aa16.08■□□□□ 0.17
CUX1-211ENST00000546411 ANXA9O76027 345 aa16.08■□□□□ 0.17
CUX1-211ENST00000546411 OGDHQ02218 1023 aa16.08■□□□□ 0.17
CUX1-211ENST00000546411 PDE1CQ14123 709 aaPredicted RBP16.08■□□□□ 0.17
CUX1-211ENST00000546411 KPNB1Q14974 876 aaKnown RBP16.08■□□□□ 0.17
CUX1-211ENST00000546411 GPR142Q7Z601 462 aa16.08■□□□□ 0.17
CUX1-211ENST00000546411 ECHDC2Q86YB7 292 aa16.08■□□□□ 0.17
CUX1-211ENST00000546411 DEFB107AQ8IZN7 70 aa16.08■□□□□ 0.17
CUX1-211ENST00000546411 PLD5Q8N7P1 536 aa16.08■□□□□ 0.17
CUX1-211ENST00000546411 ANKRD52Q8NB46 1076 aa16.08■□□□□ 0.17
CUX1-211ENST00000546411 ULK4Q96C45 1275 aa16.08■□□□□ 0.17
CUX1-211ENST00000546411 KCNK16Q96T55 309 aa16.08■□□□□ 0.17
CUX1-211ENST00000546411 DPEP3Q9H4B8 488 aa16.08■□□□□ 0.17
CUX1-211ENST00000546411 PDZD7Q9H5P4 517 aa16.08■□□□□ 0.17
CUX1-211ENST00000546411 POPDC2Q9HBU9 364 aa16.08■□□□□ 0.17
CUX1-211ENST00000546411 PTPRHQ9HD43 1115 aa16.08■□□□□ 0.17
CUX1-211ENST00000546411 TXNRD2Q9NNW7 524 aa16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms