RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-223ENST00000545440 FAM126AQ9BYI3 521 aaPredicted RBP8.12□□□□□ -1.11
SNHG1-223ENST00000545440 TGIF2Q9GZN2 237 aa8.12□□□□□ -1.11
SNHG1-223ENST00000545440 MMRN2Q9H8L6 949 aa8.12□□□□□ -1.11
SNHG1-223ENST00000545440 APOBEC3GQ9HC16 384 aaKnown RBP8.12□□□□□ -1.11
SNHG1-223ENST00000545440 CSNK1G1Q9HCP0 422 aa8.12□□□□□ -1.11
SNHG1-223ENST00000545440 PNPLA8Q9NP80 782 aa8.12□□□□□ -1.11
SNHG1-223ENST00000545440 COMMD8Q9NX08 183 aa8.12□□□□□ -1.11
SNHG1-223ENST00000545440 IL37Q9NZH6 218 aa8.12□□□□□ -1.11
SNHG1-223ENST00000545440 SOX13Q9UN79 622 aa8.12□□□□□ -1.11
SNHG1-223ENST00000545440 PCDHGA2Q9Y5H1 932 aa8.12□□□□□ -1.11
SNHG1-223ENST00000545440 THADAQ6YHU6 1953 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 TRIM49BA6NDI0 452 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 OTOL1A6NHN0 477 aaPredicted RBP8.11□□□□□ -1.11
SNHG1-223ENST00000545440 PAPSS2O95340 614 aaPredicted RBP8.11□□□□□ -1.11
SNHG1-223ENST00000545440 FAM200BP0CF97 657 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 HDCP19113 662 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 YWHAQP27348 245 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 PMS1P54277 932 aaKnown RBP8.11□□□□□ -1.11
SNHG1-223ENST00000545440 C19orf57Q0VDD7 668 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 RUNX3Q13761 415 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 PON2Q15165 354 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 DCAF17Q5H9S7 520 aaPredicted RBP8.11□□□□□ -1.11
SNHG1-223ENST00000545440 TMEM196Q5HYL7 178 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 SNX30Q5VWJ9 437 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 ANKRD40Q6AI12 368 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 TRIM68Q6AZZ1 485 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 ASCL5Q7RTU5 278 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 DDX42Q86XP3 938 aaKnown RBP eCLIP8.11□□□□□ -1.117e-6■■■□□ 16.5
SNHG1-223ENST00000545440 SPEM1Q8N4L4 309 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 ARL14EPQ8N8R7 260 aaPredicted RBP8.11□□□□□ -1.11
SNHG1-223ENST00000545440 ZBTB44Q8NCP5 570 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 SH3RF2Q8TEC5 729 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 ERCC4Q92889 916 aaPredicted RBP8.11□□□□□ -1.11
SNHG1-223ENST00000545440 FBXO32Q969P5 355 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 SLC35C1Q96A29 364 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 EXOC4Q96A65 974 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 ELMO3Q96BJ8 720 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 CHFRQ96EP1 664 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 EEF2KMTQ96G04 330 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 TWNKQ96RR1 684 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 CYP2S1Q96SQ9 504 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 KCNK16Q96T55 309 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 HNRNPABQ99729 332 aaKnown RBP8.11□□□□□ -1.11
SNHG1-223ENST00000545440 RSRP1Q9BUV0 290 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 FBXO44Q9H4M3 255 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 EBF3Q9H4W6 596 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 LMAN1LQ9HAT1 526 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 METTL14Q9HCE5 456 aaKnown RBP8.11□□□□□ -1.11
SNHG1-223ENST00000545440 GKN1Q9NS71 199 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 FAM49BQ9NUQ9 324 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 RAB20Q9NX57 234 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 DUS2Q9NX74 493 aaKnown RBP8.11□□□□□ -1.11
SNHG1-223ENST00000545440 ARMCX3Q9UH62 379 aaPredicted RBP8.11□□□□□ -1.11
SNHG1-223ENST00000545440 MAN1B1Q9UKM7 699 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 COQ4Q9Y3A0 265 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 CFAP54Q96N23 3096 aa8.11□□□□□ -1.11
SNHG1-223ENST00000545440 CKAP5Q14008 2032 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 SPTBN4Q9H254 2564 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 BICDL2A1A5D9 508 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 LINC01387J3KSC0 135 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 LEFTY2O00292 366 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 TRDMT1O14717 391 aaKnown RBP8.1□□□□□ -1.11
SNHG1-223ENST00000545440 SLC9A3R1O14745 358 aaPredicted RBP8.1□□□□□ -1.11
SNHG1-223ENST00000545440 FBXO24O75426 580 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 NFATC1O95644 943 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 B3GALT4O96024 378 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 LMNAP02545 664 aaKnown RBP8.1□□□□□ -1.11
SNHG1-223ENST00000545440 ZDHHC11BP0C7U3 371 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 TDGF1P13385 188 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 ARSAP15289 507 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 IFNAR2P48551 515 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 UBE2HP62256 183 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 CSTF1Q05048 431 aaKnown RBP8.1□□□□□ -1.11
SNHG1-223ENST00000545440 IFRD2Q12894 506 aaPredicted RBP8.1□□□□□ -1.11
SNHG1-223ENST00000545440 MORC3Q14149 939 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 CBWD6Q4V339 395 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 CBWD3Q5JTY5 395 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 CBWD5Q5RIA9 395 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 TCERG1LQ5VWI1 586 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 TTI2Q6NXR4 508 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 LYPD4Q6UWN0 246 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 C20orf204Q6ZNR8 217 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 CLEC20AQ6ZU45 233 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 C12orf29Q8N999 325 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 TRIML1Q8N9V2 468 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 ZMIZ2Q8NF64 920 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 SCAMP5Q8TAC9 235 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 TTC8Q8TAM2 541 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 WHAMMQ8TF30 809 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 SEMA4DQ92854 862 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 CYFIP2Q96F07 1278 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 SMOQ99835 787 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 SOX17Q9H6I2 414 aaPredicted RBP8.1□□□□□ -1.11
SNHG1-223ENST00000545440 ECT2Q9H8V3 914 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 CBX8Q9HC52 389 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 OSGEPQ9NPF4 335 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 IGSF5Q9NSI5 407 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 ZSCAN32Q9NX65 697 aa8.1□□□□□ -1.11
SNHG1-223ENST00000545440 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.1□□□□□ -1.11
SNHG1-223ENST00000545440 STARD13Q9Y3M8 1113 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms