RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 VNN2O95498 520 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 CKMP06732 381 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 HMGB1P09429 215 aaKnown RBP4.39□□□□□ -1.71
SNHG1-220ENST00000544550 C1SP09871 688 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 H2AFB1P0C5Y9 115 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 H2AFB2P0C5Z0 115 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 OR4Q2P0C623 313 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 MCF2P10911 925 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 ODC1P11926 461 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 GP1BBP13224 206 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 JUPP14923 745 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 PFKLP17858 780 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 CYP3A5P20815 502 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 ADSSP30520 456 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 LRPAP1P30533 357 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 HSPA4P34932 840 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 OPRD1P41143 372 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 GRIA2P42262 883 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 GRK6P43250 576 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 TNFRSF4P43489 277 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 AARSP49588 968 aaKnown RBP eCLIP4.39□□□□□ -1.715e-21■□□□□ 9.8
SNHG1-220ENST00000544550 SEMG2Q02383 582 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 TLE3Q04726 772 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 RTP5Q14D33 572 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 ZNF568Q3ZCX4 644 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 COLEC12Q5KU26 742 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 TTC22Q5TAA0 569 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 EEF1DP3Q658K8 133 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 CREB3L3Q68CJ9 461 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 NAIF1Q69YI7 327 aaPredicted RBP4.39□□□□□ -1.71
SNHG1-220ENST00000544550 TXNDC8Q6A555 127 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 SDE2Q6IQ49 451 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 C6orf15Q6UXA7 325 aaPredicted RBP4.39□□□□□ -1.71
SNHG1-220ENST00000544550 DSTYKQ6XUX3 929 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 ZNF574Q6ZN55 896 aaPredicted RBP4.39□□□□□ -1.71
SNHG1-220ENST00000544550 MAEAQ7L5Y9 396 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 NEK8Q86SG6 692 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 FMNL3Q8IVF7 1028 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 SLC41A1Q8IVJ1 513 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 DEFB119Q8N690 84 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 FRMD1Q8N878 549 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 ZNF248Q8NDW4 579 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 DNAJB8Q8NHS0 232 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 KLHL6Q8WZ60 621 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 MED8Q96G25 268 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 MRFAP1L1Q96HT8 127 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 IFT74Q96LB3 600 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 DHRS1Q96LJ7 313 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 YTHDC1Q96MU7 727 aaKnown RBP4.39□□□□□ -1.71
SNHG1-220ENST00000544550 ZMAT2Q96NC0 199 aaKnown RBP4.39□□□□□ -1.71
SNHG1-220ENST00000544550 DEPDC7Q96QD5 511 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 SRPK1Q96SB4 655 aaKnown RBP4.39□□□□□ -1.71
SNHG1-220ENST00000544550 HSD17B14Q9BPX1 270 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 EIF2AK1Q9BQI3 630 aaKnown RBP4.39□□□□□ -1.71
SNHG1-220ENST00000544550 SLC26A6Q9BXS9 759 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.39□□□□□ -1.71
SNHG1-220ENST00000544550 TPSG1Q9NRR2 321 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 C1GALT1Q9NS00 363 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 CALCOCO1Q9P1Z2 691 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 DSEQ9UL01 958 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 WNT6Q9Y6F9 365 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 MYH9P35579 1960 aaKnown RBP4.39□□□□□ -1.71
SNHG1-220ENST00000544550 LOC400499M0QZD8 3231 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 STK36Q9NRP7 1315 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 PDCD11Q14690 1871 aaKnown RBP4.39□□□□□ -1.71
SNHG1-220ENST00000544550 BAZ2BQ9UIF8 2168 aaKnown RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 VWA8A3KMH1 1905 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 ITPR1Q14643 2758 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 CNOT1A5YKK6 2376 aaKnown RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 TLDC2A0PJX2 215 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 MEI4A8MW99 385 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 B2RBV5 119 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 K7ERI5 159 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 BCAT2O15382 392 aaPredicted RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 PDPK1O15530 556 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 SOAT2O75908 522 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 SLITRK5O94991 958 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 HAPLN1P10915 354 aaPredicted RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 HOXB2P14652 356 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 HNRNPLP14866 589 aaKnown RBP eCLIP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 GSPT1P15170 499 aaKnown RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 IFNAR1P17181 557 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 GABRG2P18507 467 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 ATF6P18850 670 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 KIR2DL1P43626 348 aaPredicted RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 CCT8P50990 548 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 PMS1P54277 932 aaKnown RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 OSTNP61366 133 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 SLC7A5Q01650 507 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 EXOSC10Q01780 885 aaKnown RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 RESTQ13127 1097 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 DMP1Q13316 513 aaPredicted RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 KRT32Q14532 448 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 KCNB1Q14721 858 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 NCAPHQ15003 741 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 NECTIN1Q15223 517 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 INF2Q27J81 1249 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 HLA-BQ31612 363 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 TBC1D25Q3MII6 688 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 SLC39A12Q504Y0 691 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms